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Sequence comparisons of the 3′-end sequences of L1-clade LINEs and monocot SINE families. The 3′-end sequences of the monocot 1a (consensus), LINE1-1_ZM, and SINE2 (consensus) were aligned [34]. Vertical lines and hyphens represent identical nucleotides and gaps, respectively. A conserved region between the LINEs and SINEs is boxed. R: A/G, Y: C/T, S: C/G, W: A/T, N: any nucleotide.
