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. 2013 Aug 1;2013:424726. doi: 10.1155/2013/424726

Table 1.

Identification of SINE/LINE pairs [34].

SINE   Species Promoter LINE tail   Description of SINE/LINE pair
    Mammals        
MIR (CORE-SINEs:
Ther-1, Mon-1)		 [97–99] All mammals tRNA L2 [15] [100]
CORE-SINEs (MIR3/Ther-2) [15, 99] Mammals tRNA L3 [101] [15, 34, 102]
CORE-SINEs (Mar-1/MAR1_MD) [15, 99] Marsupials tRNA RTE-3_MD [15] [15, 34, 102]
MAR4
(MAR4_MD, WALLSI3)		 [15] Opossum and wallaby, Monodelphis domestica, Macropus eugenii (5′-end of RTE) RTE-2 (MD, ME) [15] [15, 34]
RTESINE1 [15] Opossum,
Monodelphis domestica 		(5′-end of RTE) RTE-1_MD [15] [34]
Ped-1 [103] Springhare,
Pedetes capensis (Rodentia)		 5S rRNA BovB_Pca [103] [103]
Ped-2 [103] Springhare,
Pedetes capensis (Rodentia)		 tRNA (ID SINE) BovB_Pca [103] [103]
Bov-tA [104, 105] Ruminants tRNAGlu Bov-B [105, 106] [100, 104]
Bov-A2 [104, 105] Ruminants (5′-end of BovB) Bov-B [105, 106] [104]
SINE2-1_EC [15] Horse, Equus caballus tRNA RTE-1_EC [15] [15, 34]
Afro SINEs
(AFRO_LA, PSINE1)		 [15, 107] All Afrotherians tRNA RTE1 (LA, Pca) [15] [34, 103, 108]
RTE1-N1_LA [15] Elephant,
Loxodonta africana 		(5′-end of RTE) RTE1_LA [15] [15]
SINE2-1_Pca [15] Hyrax, Procavia capensis tRNA RTE1_Pca [15] [15]
    Birds and Reptiles        
TguSINE1 [15] Zebra finch,
Taeniopygia guttata 		tRNAIle CR1-X [15] [15]
Tortoise Pol III/SINE [31, 109–111] Tortoises and turtles, Cryptodira tRNALys PsCR1 [112] [31, 113]
Sauria SINE [114, 115] Lizard, Anolis carolinensis tRNA Anolis Bov-B [114] [114]
Anolis SINE 2 [115] Lizard, Anolis carolinensis (Box A & B) Anolis LINE 2 [115] [115]
SINE2-1B_Acar/
SINE2-1_Acar		 [15] Lizard, Anolis carolinensis tRNA Vingi-2_Acar [116] [15, 34]
    Amphibians        
V-SINEs (SINE2-1_XT) [15] Frog, Xenopus (Silurana) tropicalis tRNA L2-4_XT
(L2-3, L2-6, L2-2)		 [15] [15, 34]
CORE-SINEs (MIR_Xt) [15] Frog, Xenopus (Silurana) tropicalis tRNA L2-5_XT [15] [34]
    Fish        
Sma I [117, 118] Chum and pink salmon, Oncorhynchus tRNALys SalL2 [23] [23, 31, 32]
Fok I [118] Charr, Salvelinus tRNALys SalL2 [23] [23, 31, 32]
SlmI [119] All salmonids, Salmonidae tRNALeu RSg-1 [120] [119]
CORE-SINEs (Hpa I) [102, 118] All salmonids, Salmonidae tRNA RSg-1 [120] [31]
CORE-SINEs
(AFC, SINE2-1_AFC) 		[102, 121, 122] Cichlid fish, Cichlidae tRNA CiLINE2 [121] [121]
CORE-SINEs (UnaSINE1, UnaSINE2) [123] Eel, Anguilla japonica tRNA UnaL2 [36, 123] [36, 123]
HAmo SINE [124] Carp, Cyprinidae tRNA HAmoL2 [124] [124]
DeuSINEs
(AmnSINE1, SINE3)		 [21, 125] Mammals, chicken,
zebrafish, catfish		 5S rRNA CR1-4_DR (CR1-7, CR1-9, CR1-13) [15] [21, 34, 125]
DeuSINEs
(LmeSINE1, SacSINE1)		 [125] Coelacanth and dogfish shark,
Latimeria menadoensis,
Squalus acanthias 		tRNA CR1-4_DR-like [15] [125]
DeuSINEs (OS-SINE1) [119, 125] Salmon and trout,
Oncorhynchus, Salmo 		5S rRNA RSg-1 [120] [125]
V-SINEs (HE1) [126, 127] Sharks and rays,
M. manazo, S. torazame,
H. japonicus, T. californica 		tRNA HER1 [126] [126]
V-SINEs (DANA) [127–129] Zebrafish, Danio rerio tRNA CR1-3DR/ZfL3 [15, 127] [127]
V-SINEs (Lun1) [127] Lungfish,
Lepidosiren paradoxa 		tRNA LfR1 [127] [127]
SINEX-1_CM/SINE2-1_CM [130] Elephant shark, Callorhinchus milii tRNA CR1-2_CM DQ524334 [34, 130]
    Chordates        
DeuSINEs (BflSINE1) [125] Amphioxus,
Branchiostoma floridae 		tRNA Crack-16_BF [15] [34]
    Deuterostomes        
SURF1/SINE2-4c_SP [15, 131] Sea urchin,
Strongylocentrotus purpuratus 		tRNA CR1-4_SP [15] [34]
DeuSINEs (SINE2-3_SP) [15, 125] Sea urchin,
Strongylocentrotus purpuratus 		tRNA CR1Y_SP (CR1X_SP) [15] [15, 34]
SINE2-8_SP
(SINE2-6, SINE2-4b)		 [15] Sea urchin,
Strongylocentrotus purpuratus 		tRNA L2-1_SP/CR1-3_SP [15] [34]
    Protostomes        
Gecko [132] Mosquito, Aedes aegypti tRNA I-74_AAe (MosquI, I-58, I-59, I-62, I-64,
I_Ele10, 14, 35, 37)		 [15, 133] [34, 132]
    Eumetazoans        
Nve-Nin-DC-SINE-1 (*1) [134] Sea anemone,
Nematostella vectensis 		tRNA L2-22_NV [15] [134]
Nve-Nin-DC-SINE-2 (*1) [134] Sea anemone,
Nematostella vectensis 		tRNA CR1-5_NV [15] [134]
Nve-Nin-DC-SINE-3 (*1) [134] Sea anemone,
Nematostella vectensis 		tRNA CR1-15_NV [15] [134]
SINE2-1_NV [15] Sea anemone,
Nematostella vectensis 		tRNA CR1-16_NV [15] [34]
SINE2-5_NV [15] Sea anemone,
Nematostella vectensis 		tRNA Rex1-24_NV [15] [34]
    Fungi        
Mg-SINE [135] Rice blast fungus,
Magnaporthe grisea 		tRNA MgL/MGR583 AF018033 [32, 34]
SINE2-1_BG [15] Powdery mildew fungus,
Blumeria graminis 		tRNA Tad1-24_BG (HaTad1-3, 1-5) [15] [34]
    Amoebozoa        
EdSINE1 (SINE-lile) [136] Amoeba, Entamoeba dispar Unknown R4-1_ED [15] [34]
R4-N1_ED (SINE-lile) [15] Amoeba, Entamoeba dispar Unknown R4-1_ED [15] [34]
EhLSINE1/ehapt2 (SINE-lile) [137, 138] Amoeba,
Entamoeba histolytica 		Unknown EhLINE1/EhRLE1 [30, 137] [137]
EhLSINE2 (SINE-like) [137] Amoeba,
Entamoeba histolytica 		Unknown EhLINE2/EhRLE3 [30, 137] [137]
    Land plants        
TS [35] Tobacco,
Nicotiana tabacum 		tRNA RTE-1_Stu [15] [34]
ZmSINE2/SINE2_SBi [66] Maize, Zea mays;
Sorghum, Sorghum bicolor 		tRNA LINE1-1_ZM [15] [34, 66]
ZmSINE3 [66] Maize, Zea mays tRNA LINE1-1_ZM [15] [66]
    Green algae        
SINEX-1_CR [15, 83] Chlamydomonas reinhardtii Unknown RandI-2/
DualenCr3		 [15, 139] [34, 83]
SINEX-2_CR [15, 83] Chlamydomonas reinhardtii Unknown RandI-2 (RandI-3) [15, 139] [83]
SINEX-3_CR [15, 83] Chlamydomonas reinhardtii tRNA L1-1_CR [15] [15, 83]
SINEX-4_CR [15, 83] Chlamydomonas reinhardtii Unknown RandI-2 (RandI-3) [15, 139] [34, 83]
SINEX-5_CR/SINEX-6_CR [83] Chlamydomonas reinhardtii tRNA RandI-5 [15] [83]

(*1) Subfamilies.