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. 2013 Aug 21;8(8):e72302. doi: 10.1371/journal.pone.0072302

Table 3. Top 30 most significant genes that showed differential expression between control and methionine-rich treatment.

Gene Name log2 FC FDR
LAPTM5 Lysosomal protein transmembrane 5 −14.9 4.7×10−9
NKG7 Natural killer cell group 7 sequence −13.6 4.4×10−8
VIM Vimentin −13.8 1.8×10−7
TYROBP TYRO protein tyrosine kinase binding protein −13.2 3.2×10−6
IFI6 Interferon, alpha-inducible protein 6 −12.6 1.5×10−5
CUFF.2147.1 Novel transcript unit −8.2 1.5×10−5
LOC505451 Olfactory receptor, family 1, subfamily J, member 2-like −13.0 1.5×10−5
SLAMF7 Signaling lymphocyte-activating molecule family 7 family member 7 −10.4 3.5×10−5
LOC788199 Olfactory receptor 6C74-like −10.4 7.6×10−5
LCP1 Lymphocyte cytosolic protein 1 (L-plastin) −9.9 1.1×10−4
LOC100849660 Uncharacterized 11.9 2.2×10−4
BLA-DQB MHC class II antigen −11.1 2.2×10−4
SHC2 SHC (Src homology 2 domain containing) transforming protein 2 −11.5 3.4×10−4
NT5C3 5′-nucleotidase, cytosolic III −11.5 3.5×10−4
LOC510193 Apolipoprotein L, 3-like 7.8 4.3×10−4
LOC100848815 SLA class II histocompatibility antigen, DQ haplotype D alpha chain-like −11.4 4.3×10−4
CUFF.606.1 Novel transcript unit −5.6 4.3×10−4
LOC100850656 Uncharacterized −11.2 4.8×10−4
SLC11A1 Solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 −10.7 6.9×10−4
LOC100852347 Beta-defensin 10-like −11.2 7.3×10−4
LOC100297676 C-type lectin domain family 2 member G-like −6.8 9.2×10−4
BCL2A1 BCL2-related protein A1 −7.1 1.2×10−3
INSR Insulin receptor −5.1 1.3×10−3
NOVA1 Neuro-oncological ventral antigen 1 −10.6 1.5×10−3
TBX15 T-box 15 −11.2 2.2×10−3
TMEM200C Transmembrane protein 200C −6.6 2.2×10−3
GPNMB Glycoprotein (transmembrane) nmb −7.5 2.3×10−3
ARHGAP9 Rho GTPase activating protein 9 −5.7 2.7×10−3
EIF4E1B Eukaryotic translation initiation factor 4E family member 1B −11.3 3.1×10−3
LOC100295170 Protein BEX2-like −9.3 3.5×10−3

A negative log2 Fold Change (FC) value means that the gene showed higher expression in control treatment while a positive value means that the gene showed higher expression in methionine-rich treatment.