Table 1. Summary of Illumina HiSeq 2000 short read data used for seabuckthorn transcriptome assembly.
| Data item | Leaf | Root |
|---|---|---|
| Total number of reads | 44791536 | 49222400 |
| Read length | 91 | 91 |
| Total number of HQ reads | 41067522 | 45186352 |
| Percentage of HQ reads | 91.69% | 91.80% |
| Total number of bases | 4031238240 (4.0 Gb) | 4430016000 (4.4 Gb) |
| Total number of bases in HQ reads | 3696076980 (3.7 Gb) | 4066771680 (4.0 Gb) |
| Total number of HQ bases in HQ reads | 3619124516 | 3985259341 |
| Percentage of HQ bases in HQ reads | 97.92% | 98% |
HQ stands for high quality obtained after running NGS QC toolkit on raw data