Table 4. Overrepresented GO terms of target genes of miRNAs involved in pollen-silk interactions.
GO term | Categorya | Description | Number in input listb | Number in BG/Refc | P-valued | FDRe |
GO:0009719 | P | Response to hormone stimulus | 7 | 38 | 5e–12 | 4.5e–10 |
GO:0010468 | P | Regulation of gene expression | 17 | 2216 | 5.4e–05 | 0.0023 |
GO:0034645 | P | Macromolecule biosynthetic process | 21 | 3777 | 0.00063 | 0.0072 |
GO:0003677 | F | DNA binding | 35 | 3439 | 9.1e–11 | 2e–09 |
GO:0005634 | C | Nucleus | 28 | 2294 | 7.4e–11 | 2.5e–09 |
GO:0043227 | C | Membrane-bounded organelle | 28 | 2791 | 4.3e–09 | 4.8e–08 |
GO categories: P, Biological Process; F, Molecular Function; C, Cellular Component.
Query item number in target genes.
Query item number in maize genome version 5a.
Determined by Fisher's exact test.
False discovery rate, determined by the Yekutieli procedure.