Table 1. Summary of sequencing results of in vitro and in vivo Illumina based cDNA libraries.

Growth Condition	Sample #	Number of Reads (in millions)	% Reads Aligned to Genome	% Reads Aligned in Pairs
	1	111.72	90.21	80.24
Mid-Log	2	149.09	90.87	82.90
	3	106.84	89.61	80.52
	1	114.91	84.14	76.22
Stationary	2	112.21	83.53	74.01
	3	157.25	84.33	75.51
	1	389.47	15.34	89.58
Chick	2	379.03	11.17	87.63
	3	367.79	17.29	85.56