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. 2013 Aug 22;9(8):e1003176. doi: 10.1371/journal.pcbi.1003176

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© 2013 Cocco et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Filled squares represent the native contact map on the 3D fold (PDB 5pti, with turquoise squares signaling all-atom distances below 5 Å, and grey ones distances between 5 Å and 8 Å). The 50 top predicted contacts with minimal separation of 5 positions along the sequence () are shown with empty squares: true-positive predictions (distance Å) are colored in red, and false-positive predictions in blue. Predictions are made with the Hopfield-Potts model with patterns (bottom right corner) and with patterns (DCA, top left corner). For both values of there are 48 true-positive and 2 false-positive predictions.

Inline graphic — Filled squares represent the native contact map on the 3D fold (PDB 5pti, with turquoise squares signaling all-atom distances below 5 Å, and grey ones distances between 5 Å and 8 Å). The 50 top predicted contacts with minimal separation of 5 positions along the sequence () are shown with empty squares: true-positive predictions (distance Å) are colored in red, and false-positive predictions in blue. Predictions are made with the Hopfield-Potts model with patterns (bottom right corner) and with patterns (DCA, top left corner). For both values of there are 48 true-positive and 2 false-positive predictions.