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. 2013 Aug 22;9(8):e1003564. doi: 10.1371/journal.ppat.1003564

Table 1. Phosphorylation sites within CnaA and CnaB subunits identified by TiO2 enrichment and LC-MS/MS analysis.

Protein Peptide Sequencea Phosphorylated Residue m/z Charge Mass Error (ppm) Mascot Ion Scoreb Ascore Localization Probabilityc
CnaA EELEDETPTSV[pS]PSAPSPPLPMDVESSEFK S408 1104.4843 3 −1.6 46 99%
CnaA EELEDETPT[pS]V[pS]PSAPSPPLPMDVESSEFK S406, S408 1131.1415 3 −2.1 54 80%, 80%
CnaA EELEDETPTSVSP[pS]AP[pS]PPLPMDVESSEFK S410, S413 1131.1415 3 −0.5 75 90%, 99%
CnaA EELEDETPT[pS]VSPSAPSPPLPMDVESSEFKR S406 1156.5159 3 −3.4 94 90%
CnaA RI[pS]MSAGSGR S537 551.2449 2 −4.2 72 99%
CnaA RI[pS]MSAG[pS]GR S537, S542 591.2272 2 −5.3 66 99%, 99%
CnaB RA[pS]VGTSQLLDNIV[pS]ASNFDRDEVDR S21, S33 1008.7813 3 −5.5 94 99%, 99%
CnaB RA[pS]VGTSQLLDNIVSASNFDRDEVDR S21 982.1329 3 1.5 106 99%
a

[pS] indicates phosphorylated residue.

b

Mascot identity score of >41 indicates identity or extensive homology (p<0.05).

c

Probability of phosphorylated residue localization based on Ascore algorithm.

CnaA subunit and CnaB subunit peptides contained uniquely identified phosphorylation residues or combinations of phosphorylation residues. Due to the proximity of multiple phosphorylatable residues within these peptides, mass spectra from each identification were submitted to an independent algorithm (Ascore) which assigns confidences to the localization of each phosphorylation.