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. 2011 Aug 16;5:129. doi: 10.1186/1752-0509-5-129

Table 5.

Metabolic fluxes comparison for wild-type and mutant C. glutamicum

Wildtype Mutant


Becker OpenFLUX FIA Becker OpenFLUX FIA


const. meas. ratios const. meas.
Glucose 6-phosphate isomerase 49.8 51.2 51.9 52.0 51.5 41.6 40.4 42.1 42.5
Glucose 6-phosphate dehydrogenase 46.8 45.0 44.7 44.7 45.1 56.2 57.5 55.7 55.1
Transaldolase 14 13.4 13.3 13.3 13.4 17.5 17.7 17.3 17.0
Transketolase 1 14 13.4 13.3 13.3 13.4 17.5 17.7 17.3 17.0
Transketolase 2 11.9 11.3 11.2 11.2 11.3 15.8 16.4 15.6 15.4
Glyceraldehyde 3-phosphate dehydrogenase 157.5 158.0 158.2 158.6 158.0 160.8 161.0 161.0 160.5
Pyruvate kinase 147.3 148.0 147.8 148.2 147.6 152.6 152.0 152.5 152.0
Pyruvate dehydrogenase 77.5 75.8 74.8 74.9 74.9 87.5 85.2 85.1 79.7
Pyruvate carboxylase - carboxykinase 34.4 35.8 35.9 36.1 35.8 31.5 32.4 32.5 34.9
Citrate synthase 52.5 50.8 49.6 49.7 49.9 67.7 65.4 65.3 58.9
Isocitrate dehydrogenase 52.5 50.8 49.6 49.7 49.9 67.7 65.4 65.3 58.9
Oxoglutarate dehydrogenase 41.2 39.4 38.2 38.3 38.5 59.9 57.6 57.5 50.7
Aspartokinase 11.2 11.2 11.2 11.4 11.2 14.2 14.2 14.2 15.9

Estimated metabolic fluxes values for the different approaches - the ad-hoc simulation results from Becker et al. [18], the OpenFLUX results [15], and the FIA results for its various simulated scenarios (measured fluxes used as constants, as measurements, and when using ratios of non-normalized data.)