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. Author manuscript; available in PMC: 2014 Jul 12.
Published in final edited form as: Biochem Biophys Res Commun. 2013 Jun 15;436(4):677–684. doi: 10.1016/j.bbrc.2013.06.016

Table 2.

Gene name Alternative Name/Function
High in trophoblast Lineage cells vs. iPS cells CDX2 (caudal type homeobox 2) Important functions in early differentiation to trophoblast lineage
EGF (epidermal growth factor) stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro
GATA2 (GATA binding protein 2) Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells.
KRT8 (keratin 8) together with KRT18, to be necessary for embryo survival,
LIFR (leukemia inhibitory factor receptor alpha) Signal-transducing molecule. May have a common pathway with IL6ST.
ISL1 (ISL LIM homeobox 1) Binds to one of the cis-acting domain of the insulin gene enhancer.
IGF2 (insulin-like growth factor 2) is influenced by placental lactogen and may play a role in fetal development
COL3A1 (collagen, type III, alpha 1) Collagen type III occurs in most soft connective tissues along with type I collagen
HGF (hepatocyte growth factor) acts as growth factor for a broad spectrum of tissues and cell types.
GATA3 (GATA binding protein 3) an important regulator of T-cell development and plays an important role in endothelial cell biology.
GATA4 (GATA binding protein 4) Acts as a transcriptional activator of ANF in cooperation with NKX2-5.
High in iPS cells vs. Trophoblast lineage cells SOX2 (SRY (sex determining region Y)-box 2) Critical for early embryogenesis and for embryonic stem cell pluripotency
SLAIN1 (SLAIN motif family, member 1) stem cell gene
ZNF483 (zinc finger protein 483) May be involved in transcriptional regulation
EPB41 (erythrocyte membrane protein band 4.1) tumor suppressor genes in meningioma pathogenesis.
LRIG1 (leucine-rich repeats and immunoglobulin-like domains) Act as a feedback negative regulator of signaling by receptor tyrosine kinases
PRDM14 (PR domain containing 14) may suppress expression of differentiation marker genes in human embryonic stem cells
POLR3G (polymerase (RNA) III (DNA directed) polypeptide G) human embryonic stem cell specific gene
CAV1 (caveolin 1, caveolae protein) CAV-1 is a transcriptional target of EWS/FLI-1
NANOG (Nanog homeobox) Imposes pluripotency on ES cells and prevents their differentiation towards extraembryonic endoderm and trophectoderm lineages.
SALL4 (Sal –like 4) may be a zinc finger transcription factor