Table 3.
Intraspecies phylogenetic markers of the three Nannochloropsis oceanica strains of CCMP531, CCMP1779 and IMET1
| Region | Location | CCMP531 | IMET1 | CCMP1779 | Synonymous/nonsynonymous |
|---|---|---|---|---|---|
|
rps11_mt-nad4 |
8512 |
G |
A |
A |
- |
| |
8513 |
C |
T |
T |
- |
| |
8555 |
- |
G |
G |
- |
| |
8577 |
C |
A |
A |
- |
|
nad4 |
8710 |
T |
C |
C |
synonymous |
| |
8720 |
G |
A |
A |
synonymous |
| |
8941 |
C |
A |
A |
synonymous |
| |
8956 |
C |
T |
T |
synonymous |
|
rps3_mt |
21403 |
G |
C |
C |
synonymous |
| |
21488 |
T |
C |
C |
synonymous |
| |
21583 |
A |
T |
T |
synonymous |
| |
21637 |
A |
G |
G |
synonymous |
| |
21682 |
A |
G |
G |
synonymous |
| |
21940 |
G |
A |
A |
synonymous |
|
cox2-rrn16_mt |
34621 |
G |
T |
T |
- |
| |
34727 |
A |
G |
G |
- |
| |
34756 |
C |
T |
T |
- |
| |
34801 |
A |
G |
G |
- |
| |
34866 |
- |
T |
T |
- |
| |
34867 |
- |
T |
T |
- |
| |
34870 |
- |
A |
A |
- |
| |
34871 |
- |
A |
A |
- |
| |
34880 |
A |
- |
- |
- |
| |
34885 |
A |
- |
- |
- |
| |
34898 |
T |
C |
C |
- |
| |
34927 |
- |
A |
A |
- |
| |
34934 |
C |
T |
T |
- |
| |
34971 |
G |
A |
A |
- |
| 34995 | A | A | T | - |
Note: “-” indicated that the mutation was located at a non-protein-coding region.