Table 4.
Simple sequence repeat (SSRs) for intra-species discrimination
| Repeat | Length | Region | Locus | Organelle | Strain |
|---|---|---|---|---|---|
|
A |
10 |
Intergenic |
psbB-petF |
pt |
IMET1, 531 |
|
T |
10 |
Genic |
rps12 |
pt |
IMET1, 531 |
|
T |
10 |
Intergenic |
rpl16-rps3 |
pt |
IMET1, 531 |
|
A |
10 |
Intergenic |
secA-rpl34 |
pt |
IMET1, 531 |
|
G* |
14 |
Intergenic |
psbV-clpC |
pt |
IMET1 |
|
TA* |
14 |
Intergenic |
trnK(uuu)-trnG(gcc) |
pt |
IMET1 |
|
T* |
10 |
Intergenic |
tufA-rps7 |
pt |
531 |
|
T |
11 |
Genic |
coxI |
mt |
IMET1, 531 |
|
A |
11 |
Genic |
atp1 |
mt |
IMET1, 531 |
|
A |
10 |
Intergenic |
orf321 |
mt |
IMET1, 531 |
|
A |
10 |
Genic |
rpl14 |
mt |
IMET1, 531 |
|
T |
10 |
Intergenic |
trnD(gtc)-trnG(tcc) |
mt |
IMET1, 531 |
|
A |
10 |
Genic |
rps13 |
mt |
IMET1, 531 |
|
T |
10 |
Intergenic |
trnK(ttt)-nad4L |
mt |
IMET1, 531 |
| A* | 12 | Genic | rps3 | mt | 531 |
* SSRs that are specifically present in IMET1 or CCMP531.