Table 1.
Taxonomic distribution of RedCAP sequences in red algae with primary plastids and algae with secondary plastids of red algal origin
| Classification (class, species) | Database [references] | Gene model |
|---|---|---|
| Cryptophyceae |
|
|
|
Guillardia theta |
JGI [65,66] |
Guith1:186670 |
| Coccolithophyceae |
|
|
|
Emiliania huxleyi |
JGI [68] |
Emihu1:310333 |
|
Isochrysis galbana |
GenBank EST [70] |
gi106825476 |
| Pavlovophyceae |
|
|
|
Diacronema lutheri |
GenBank EST [70] |
gi106858477 |
| Phaeophyceae |
|
|
|
Ectocarpus siliculosus |
GenBank EST [21,70] |
gi242173528 |
| |
OrcAE [22,23] |
Esi0256_0036 |
| Bacillariophyceae |
|
|
|
Fragilariopsis cylindrus |
JGI [68] |
Fracy1:210193 |
|
Phaeodactylum tricornutum |
JGI [61,62] |
Phatr2:17326 |
| Coscinodiscophyceaes |
|
|
|
Thalassiosira pseudonana |
JGI [63,64] |
Thaps3:270215 |
| Dictyochophyceae |
|
|
|
Pseudochattonella farcimen |
GenBank EST [24,70] |
gi319967268 |
| Pelagophyceae |
|
|
|
Aureococcus anophagefferens |
JGI [25,68] |
Auran1:25646 |
| Florideophyceae |
|
|
|
Furcellaria lumbricalis |
GenBank EST [26,70] |
gi294363890 |
|
Gracilaria changii |
GenBank EST [70] |
gi120457728 |
|
Gracilaria tenuistipitata |
GenBank EST [70] |
gi327362708 |
|
Griffithsia japonica |
UniProt [75] |
Q7XZ09 |
|
Griffithsia okiensis |
GenBank EST [27,70] |
gi224829379 |
| Cyanidiophyceae |
|
|
|
Galdieria sulphuraria |
Michigan State University |
contig 9803 |
| |
Galdieria database[72-74] |
|
| Bangiophyceae |
|
|
|
Pyropia yezoensis |
GenBank EST [28,70] |
gi8590586 |
| Porphyridiophyceae |
|
|
| Porphyridium purpureum | GenBank EST [29,70] | gi317790494 |