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. 2013 Aug 6;13:165. doi: 10.1186/1471-2148-13-165

Table 1.

Fourteen predicted HGT genes in the L. vannamei genome

Symbol Length Typesa Contig position GenBank ID Function Top hit speciesb Phylum Accession GI E-value Identity Coverage Figures
acsf
672
B → L
Contig124858619: 312-944
KC701594
acetyl-coenzyme A synthetase family protein
Desulfotomaculum kuznetsovii
Chloroflexi
667983253
5.00E-48
66.87
72.77%
Figure S1
rpsF
395
B → L
Contig124943021: 4082-4445
KC701595
30S ribosomal protein S6
Flavobacteriales bacterium
Bacteroidetes
1163788026
6.00E-50
96.61
44.81%
Figure S2
rpsN
593
B → L
Contig5551: 3683-4206
KC701598
50S ribosomal protein L21
Gramella forsetii
Bacteroidetes
1160887756
2.00E-58
79.31
88.03%
Figure S3
exbB
522
B → L
Contig124942315: 3448-3593
KC701596
biopolymer transport protein
Robiginitalea biformata
Bacteroidetes
3320593070
1.00E-78
96.89
92.53%
Figure S4
mopB
760
B → L
Contig124944249: 1863-1980
KC701597
molybdopterin oxidoreductase, iron-sulfur binding subunit
Polaribacter irgensii
Firmicutes
3336447549
5.00E-123
83.27
99.08%
Figure S5
tnpA
352
B → L
Contig5540: 2118-2468
KC701599
transposase
Escherichia Coli
Gama-proteobacteria
269961834
1.00E-60
100
98.01%
Figure S6
stat
784
B → L
Contig124277025: 193-313
KC701600
streptomycin 3″-adenylyltransferase
Shigella flexneri
Gama-proteobacteria
3331678336
8.00E-78
100
56.25%
Figure S7
rpc2
778
B → L
Contig124717565: 157-356
KC701601
repressor protein C2
Escherichia Coli
Gama-proteobacteria
3333019710
6.00E-47
94.74
21.98%
Figure S8
dhfr
692
B → L
Contig124922462: 426-1117
KC701602
dihydrofolate reductase
Vibrio harveyi
Gama-proteobacteria
3323184048
2.00E-52
69.57
69.80%
Figure S9
cata
709
B → L
Contig147675: 106-530
KC701603
chloramphenicol acetyltransferase
Bacteroides uniformis
Bacteroidetes
1120437905
1.00E-81
100
59.24%
Figure S10
sdrp
286
B → L
Contig124657743: 33-616
KC701604
short-chain dehydrogenase/reductase SDR
Burkholderia phymatum
Beta-proteobacteria
1186471973
3.00E-29
67.37
99.99%
Figure S11
omtp
660
B → A
Contig123317449: 1-217
KC701605
O-methyltransferase family protein
Francisella sp.
Gama-proteobacteria
88802104
5.00E-23
44.65
72.27%
Figure 2
ankp
955
F → L
Contig124712867: 86-719
KC701606
ankyrin repeat-containing protein
Grosmannia clavigera
Ascomycota
2260060705
2.00E-25
46.39
30.47%
Figure S12
deha 761 F → L Contig121079137: 1-172 KC701607 DEHA2A03014p Debaryomyces hansenii Ascomycota 294654414 8.00E-22 37.23 54.01% Figure S13

aThe HGT types of each HGT gene. B → L indicates HGT from Bacteria to L. vannamei or its ancestor; B → A indicates HGT from Bacteria-to-Arthropoda or its ancestor; F → L indicates HGT from Fungi-to-L. vannamei or its ancestor. bThe Arthropoda-related sequences were removed from the top hit BLAST species.