Table 18.
Epigenetic and DNA-remodelling proteins in the predicted proteome of A. digitifera
| |
|
|
|---|---|---|
| Gene sequence | KEGG Orthology | Encoded protein description |
| v1.04426; v1.02042 |
K02528 |
16S rRNA (adenine1518-N6/1519-N6)-dimethyltransferase |
| v1.22358; v1.00249 |
K14191 |
18S rRNA (adenine1779-N6/1780-N6)-dimethyltransferase |
| v1.19400; v1.04238 |
K00561 |
23S rRNA (adenine2085-N6)-dimethyltransferase |
| v1.05107; v1.05242 |
K01488 |
Adenosine deaminase |
| v1.04152; v1.09790 |
K14857 |
AdoMet-dependent rRNA methyltransferase SPB1 |
| v1.00197 |
K13530 |
AraC family transcriptional regulator DNA methyltransferase |
| v1.12967; v1.19789; v1.07763 |
K14589 |
Cap-specific mRNA (nucleoside-2′-O-)-methyltransferase 1 |
| v1.24281 |
K01489 |
Cytidine deaminase |
| v1.16211; v1.14952; v1.01094; v1.06983 |
K00558 |
DNA (cytosine-5-)-methyltransferase |
| v1.19683; v1.05688; v1.04223 |
K11324 |
DNA methyltransferase 1-associated protein 1 |
| v1.14033; v1.19860; v1.19081; v1.04188 |
K11420 |
Euchromatic histone-lysine N-methyltransferase |
| v1.02068 |
K01487 |
Guanine deaminase |
| v1.02920 |
K05931 |
Histone-arginine methyltransferase CARM1 |
| v1.17589 [+ 7 other sequence copies] |
K11446 |
Histone demethylase JARID1 |
| v1.07640 |
K06101 |
Histone-lysine N-methyltransferase ASH1L |
| v1.13515; v1.18577; v1.20187; v1.19182 |
K09186 |
Histone-lysine N-methyltransferase MLL1 |
| v1.08381 |
K09187 |
Histone-lysine N-methyltransferase MLL2 |
| v1.24258; v1.19182 |
K09188 |
Histone-lysine N-methyltransferase MLL3 |
| v1.07992; v1.10302; v1.13829 |
K09189 |
Histone-lysine N-methyltransferase MLL5 |
| v1.06939; v1.15255; v1.15254 |
K11424 |
Histone-lysine N-methyltransferase NSD1/2 |
| v1.05552 |
K11422 |
Histone-lysine N-methyltransferase SETD1 |
| v1.07744 |
K11423 |
Histone-lysine N-methyltransferase SETD2 |
| v1.03190 |
K11431 |
Histone-lysine N-methyltransferase SETD7 |
| v1.21867 |
K11428 |
Histone-lysine N-methyltransferase SETD8 |
| v1.18700 [+ 8 other sequence copies] |
K11421 |
Histone-lysine N-methyltransferase SETDB |
| v1.07557; v1.11409 |
K11419 |
Histone-lysine N-methyltransferase SUV39H |
| v1.24733; v1.13497 |
K11429 |
Histone-lysine N-methyltransferase SUV420H |
| v1.15405; v1.10291; v1.17601; v1.02845; v1.08629 |
K11450 |
Lysine-specific histone demethylase 1 |
| v1.23155; v1.09394; v1.17624; v1.05370 |
K14835 |
Ribosomal RNA methyltransferase Nop2 |
| v1.18460 [+ 6 other sequence copies] |
K03500 |
Ribosomal RNA small subunit methyltransferase B |
| v1.07407; v1.03110 |
K08316 |
Ribosomal RNA small subunit methyltransferase D |
| v1.12193 |
K02427 |
Ribosomal RNA large subunit methyltransferase E |
| v1.11499 |
K11392 |
Ribosomal RNA small subunit methyltransferase F |
| v1.16053; v1.12676 |
K03437 |
RNA methyltransferase, TrmH family |
| v1.12453; v1.05459 |
K13097 |
Methylcytosine dioxygenase |
| v1.07692 |
K07451 |
5-Methylcytosine-specific restriction enzyme A |
| v1.21815; v1.17113 |
K00565 |
mRNA (guanine-N7-)-methyltransferase |
| v1.06363; v1.03360; v1.21218 |
K05925 |
mRNA (2′-O-methyladenosine-N6-)-methyltransferase |
| v1.09661 |
K07442 |
tRNA (adenine-N1-)-methyltransferase catalytic subunit |
| v1.08094; v1.04036; v1.18614 |
K03256 |
tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit |
| v1.11456; v1.00738; v1.04577 |
K03439 |
tRNA (guanine-N7-)-methyltransferase |
| v1.08042 |
K14864 |
tRNA methyltransferase |
| v1.20501 |
K00557 |
tRNA (uracil-5-)-methyltransferase |
| v1.15147 |
K14964 |
Set1/Ash2 histone methyltransferase subunit ASH2 |
| v1.08925 | K00571 | Site-specific DNA-methyltransferase (adenine-specific) |