Table 4.
Percent nucleotide identity of the L protein, P1 capsid, P2 non-structural, P3 non-structural and 3′UTR regions of Sing-M105-02 compared to Sing-M100-02 and other EMCV strains
| Virus strain | Proposed lineage | L | P1 | P2 | P3 | 3′ UTR |
|---|---|---|---|---|---|---|
| Sing-M100-02 |
D |
100.0 |
99.9 |
99.9 |
100.0 |
100.0 |
| EMCV Ruckert (M81861) |
A |
79.1 |
75.6 |
74.9 |
74.8 |
84.1 |
| EMCV pV21 (X74312) |
79.1 |
75.6 |
74.7 |
75.0 |
85.7 |
|
| EMCV PV2 (X87335) |
80.1 |
74.9 |
75.4 |
74.8 |
85.6 |
|
| EMCV B (M22457) |
79.1 |
74.9 |
75.1 |
74.7 |
85.4 |
|
| EMCV D (M22458) |
80.1 |
75.0 |
75.1 |
74.7 |
85.6 |
|
| EMCV Mengo M (L22089) |
C |
81.6 |
76.1 |
74.5 |
74.9 |
87.9 |
| EMCV 1086C (DQ835185) |
B |
86.1 |
75.5 |
73.1 |
73.3 |
NA |
| EMCV RD1338 (JX257003) | E | 80.1 | 67.7 | 76.4 | 77.3 | 81.2 |
The proposed EMCV lineage is also indicated. The virus strains names are shown followed by the GenBank accession number in brackets. NA indicates sequence data not available.