Table 5.
ESTs and the plausible functions in the homologous ESTs outlier loci among populations
|
SNP marker and EST |
Gene function and homologus EST |
|
|
|||
|---|---|---|---|---|---|---|
| Code | SNP markers | Map position | Function | Accession no. | Identity | E-value |
| Outlier 1 |
BE605063_1_A_Y_252 |
1A |
Uncharacterized LOC100821025, B. distachyon |
XM_003574117.1 |
89% |
0 |
| Outlier 2* |
BE494527_1_A_Y_449 |
1AL1-0.17-0.61 |
Phosphoethanolamine methyltransferase, T. aestivum |
AY065971.1 |
96% |
3e-86 |
| Outlier 3 |
BG314205_1_B_33 |
C-1BL6-0.32 |
Uncharacterized LOC100839226, B. distachyon |
XM_003574093.1 |
86% |
0 |
| Outlier 4 |
BE637971_1_B_Y_181 |
1BS.sat18-0.50-1.00 |
Uncharacterized LOC100831964, B. distachyon |
XM_003573654.1 |
85% |
2e -108 |
| Outlier 5 |
BE443797_1_B_436 |
1BS10-0.50-0.84 |
26S proteasome non-ATPase regulatory subunit 13-like, B. distachyon |
XM_003574348.1 |
89% |
0 |
| Outlier 6 |
BE445242_2_A_362 |
C-2AS5-0.78 |
Uncharacterized LOC100842418, B. distachyon |
XM_003562526.1 |
90% |
0 |
| Outlier 7* |
BE518440_2_A_Y_187 |
2AS5-0.78-1.00 |
GTP-binding protein (GBP-1), T. aestivum |
DQ489316.1 |
97% |
0 |
| Outlier 8 |
BE406351_2_A_Y_124 |
2A |
Probable glycerophosphoryl diester phosphodiesterase 2, B. distachyon |
XM_003579903.1 |
91% |
4e-139 |
| Outlier 9 |
BE406351_2_A_76 |
2A |
Probable glycerophosphoryl diester phosphodiesterase 2, B. distachyon |
XM_003579903.1 |
91% |
4e-139 |
| Outlier 10 |
BE404601_2_B_Y_66 |
C-2BS1-0.53 |
Uncharacterized LOC100826320, B. distachyon |
XM_003562643.1 |
85% |
4e1-15 |
| Outlier 11 |
BE499362_2_B_Y_257 |
2B |
Probable signal peptidase complex subunit 2-like, B. distachyon |
XM_003579773.1 |
91% |
0 |
| Outlier 12 |
BG263769_3_A_Y_343 |
3A |
Uncharacterized LOC100822853, B. distachyon |
XM_003569549.1 |
92% |
9e-151 |
| Outlier 13 |
BE445508_3_B_Y_273 |
3B |
Aegilopoides isolate D58c hypothetical protein, T. monococcum |
HM539557.1 |
99% |
0 |
| Outlier 14 |
BE517914_3_B_340 |
3BL10-0.50-0.63 |
Ras-related protein RABE1a-like, B. distachyon |
XM_003564523.1 |
94% |
2e-178 |
| Outlier 15 |
BE424246_3_B_131 |
3BL7-0.63-1.00 |
cDNA, clone: WT006_E06, T. aestivum |
AK333352.1 |
99% |
0 |
| Outlier 16 |
BE517732_3_B_294 |
3BL7-0.63-1.00 |
KH domain-containing protein, B. distachyon |
XM_003564748.1 |
82% |
5e-141 |
| Outlier 17 |
BE443973_4_A_Y_130 |
4AS1-0.20-0.63 |
Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1, 3-glucosyltransferase, B. distachyon |
XM_003557947.1 |
90% |
0 |
| Outlier 18 |
BE443973_4_A_105 |
4AS1-0.20-0.63 |
Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1, 3-glucosyltransferase, B. distachyon |
XM_003557947.1 |
90% |
0 |
| Outlier 19 |
BE490599_4_A_Y_132 |
C-4AL12-0.43 |
cDNA, clone: WT003_N17, cultivar: Chinese Spring, T. aestivum |
AK332386.1 |
92% |
2e-82 |
| Outlier 20 |
BE497184_4_A_Y_109 |
C-4AL12-0.43 |
Putative methylsterol monooxygenase DDB_G0269788-like, B. distachyon |
XM_003577145.1 |
91% |
0 |
| Outlier 21 |
BE591861_4_A_Y_848 |
C-4AS1-0.20 |
KH domain-containing protein At4g18375-like, B. distachyon |
XM_003557826.1 |
90% |
5e-174 |
| Outlier 22 |
BE404717_4_A_Y_280 |
4AS4-0.63-0.76 |
Kelch motif family protein, Z. mays |
NM_001155181.1 |
79% |
5e-50 |
| Outlier 23 |
BE446161_4_B_Y_162 |
4BL5-0.86-1.00 |
cDNA, clone: SET2_P19, T. aestivum |
AK335999.1 |
99% |
0 |
| Outlier 24 |
BF482356_4_B_Y_504 |
4B |
Ubiquitin carboxyl-terminal hydrolase 12-like, B. distachyon |
XM_003577385.1 |
91% |
3e-171 |
| Outlier 25 |
BF482216_4_B_Y_57 |
4BL5-0.86-1.00 |
Endoribonuclease Dicer homolog 1-like, B. distachyon |
XM_003558898.1 |
91% |
0 |
| Outlier 26 |
BE443538_5_A_1436 |
5AS1-0.40-0.75 |
Pollen-specific protein SF3-like, B. distachyon |
XM_003575978.1 |
93% |
0 |
| Outlier 27 |
BG275060_6_A_Y_309 |
6AS1-0.35-0.65 |
Peroxisomal fatty acid beta-oxidation multifunctional protein, B. distachyon |
XM_003572368.1 |
92% |
0 |
| Outlier 28 |
BE590521_6_B_N_331 |
C-6BL3-0.36 |
Adenine phosphoribosyltransferase 2-like, B. distachyon |
XM_003575301.1 |
90% |
4e-75 |
| Outlier 29 |
BE498662_7_A_Y_513 |
7AS8-0.45-0.59 |
Pantothenate kinase 4, Z. mays |
NM_001156082.1 |
87% |
3e-137 |
| Outlier 30* |
BE488670_7_A_Y_73 |
7AL1-0.39-0.71 |
Spermidine synthase, T. aestivum |
HQ121400.1 |
99% |
0 |
| Outlier 31 |
BF482529_7_A_304 |
7AL1-0.39-0.71 |
50S ribosomal protein L1-like, B. distachyon |
XM_003563790.1 |
86% |
8e-143 |
| Outlier 32 |
BF292264_7_A_712 |
7AS1-0.89-1.00 |
GDT1-like protein, B. distachyon |
XM_003574474.1 |
94% |
4e-52 |
| Outlier 33 | BE518436_7_B_Y_671 | 7Bs | BRCA1-A complex subunit BRE-like, B. distachyon | XM_003563526.1 | 88% | 3e-176 |
Candidate loci from known genes of wheat were indicated by *.