Table 1.
Comparison of genomic features between N. cyriacigeorgica GUH-2 and eight Actinobacteria
| |
N. cyriacigeorgica |
N. farcinica |
R. equi |
R. jostii |
M. tuberculosis |
M. smegmatis |
C. diphtheriae |
C. glutamicum |
A. mediterranei |
|---|---|---|---|---|---|---|---|---|---|
| Features | GUH-2 | 10152 | ATCC 33707 | RHA1 | H37Rv | MC2 155 | NCTC 13129 | ATCC 13032 | U32 |
| Size (nt) |
6,194,645 |
6,021,225 |
5,235,298 |
9,702,737 |
4,411,532 |
6,988,209 |
2,488,635 |
3,309,401 |
10,236,715 |
| G + C (%) |
68.37 |
70.83 |
68.81 |
67.0 |
65.61 |
67.40 |
53.48 |
53.81 |
71.29 |
| Average CDS length (nt) |
983.29 |
922.77 |
952.39 |
872.17 |
923.13 |
905.65 |
927.24 |
923.69 |
936.1 |
| Average intergenic region (nt) |
171.09 |
117.23 |
109.07 |
117.54 |
114.69 |
84.84 |
119.08 |
156.45 |
126.77 |
| Protein coding density (%) |
86.73 |
90.93 |
91.16 |
90.29 |
91.33 |
91.16 |
87.11 |
86.49 |
90.69 |
| Protein-coding sequences (CDS) |
5.491 |
5.984 |
5124 |
9.145 |
4.454 |
7.449 |
2.491 |
3.128 |
9.988 |
| Pseudogenes |
14 |
Un* |
13 |
40 |
8 |
290 |
131 |
2 4 |
|
| rRNA (operon) |
3 |
3 |
1 |
4 |
3 |
6 |
5 |
6 |
4 |
| tRNA | 49 | 53 | 52 | 52 | 45 | 47 | 54 | 60 | 52 |