TABLE 3.
Classification of up-regulated genes
| Functional class | Gene | Description |
|---|---|---|
| Pathogenesis | HP0522 | cag PAI cag3 |
| Chemotaxis and motility | HP1274 | Paralyzed flagellar protein (pflA) |
| HP1559 | Flagellar basal-body rod protein (flgB) | |
| Cell envelope | HP0196 | UDP-3-0-(3-hydroxymyristoyl)glucosamine N-acyltransferase (lpxD) |
| HP0229 | Outer membrane protein (omp6) | |
| HP0896 | Outer membrane protein (omp19) | |
| Protein secretion | HP1255 | Protein translocation protein, low temperature (secG) |
| Transport and binding protein | HP1341 | Siderophore-mediated iron transport protein (tonB) |
| HP0582 | Predicted siderophore-mediated iron transport protein | |
| Transcription | HP0550 | Transcription termination factor Rho (rho) |
| Translation | HP0247 | ATP-dependent RNA helicase DEAD-box family (deaD) |
| HP0124 | Translation initiation factor IF-3 (infC) | |
| HP0123 | Threonyl-tRNA synthetase (thrS) | |
| Fatty acid metabolism | HP0202 | Beta-ketoacyl-acyl carrier protein synthetase III (fabH) |
| Central intermediary metabolism | HP1285 | Predicted acid phosphatase lipoprotein |
| Purines, pyrimidines | HP0757 | Beta-alanine synthetase homolog |
| Conserved | HP1430 | Predicted ATP/GTP binding protein |
| Unknown | HP0906 | HP predicted coding region HP0906 |
| HP0222 | HP predicted coding region HP0222 | |
| HP0836 | HP predicted coding region HP0836 | |
| HP0118 | HP predicted coding region HP0118 | |
| HP0973 | HP predicted coding region HP0973 |