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. 2004 Apr;48(4):1249–1255. doi: 10.1128/AAC.48.4.1249-1255.2004

TABLE 2.

Sequences of the primers used to detect bla genes and their promoter regions

PCR target Primer name Primer sequencea
blaCTX-M (CTX-M-1 group) M13 upper 5′-GGT TAA AAA ATC ACT GCG TC-3′
M13 lower 5′-TTG GTG ACG ATT TTA GCC GC-3′
blaCTX-M (CTX-M-2 group) M25 upper 5′-ATG ATG ACT CAG AGC ATT CG-3′
M25 lower 5′-TGG GTT ACG ATT TTC GCC GC-3′
blaCTX-M (CTX-M-9 group) M9 upper 5′-ATG GTG ACA AAG AGA GTG CA-3′
M9 lower 5′-CCC TTC GGC GAT GAT TCT C-3′
blaTEM OT3 5′-ATG AGT ATT CAA CAT TTC CG-3′
OT4 5′-CCA ATG CTT AAT CAG TGA GG-3′
blaCMY CF1 5′-ATG ATG AAA AAA TCG TTA TGC-3′
CF2 5′-TTG TAG CTT TTC AAG AAT GCG C-3′
tnpISEcp1b ISEcp1 5′-AAA AAT GAT TGA AAG GTG GT-3′
MA1 reverse 5′-ACY TTA CTG GTR CTG CAC AT-3′
tnpIS26 IS26 5′-AGC GGT AAA TCG TGG AGT GA-3′
MA1 reverse 5′-ACY TTA CTG GTR CTG CAC AT-3′
IS903 IS903 reverse 5′-CGG TTG TAA TCT GTT GTC CA-3′
M1 IS903 5′-CGT CGG CGG CTA AAA TCG TC-3′
M9 IS903 5′-CTA CGG CAC CAC CAA TGA TA-3′
ORF513 ORF513 5′-TGG AAG AGG GCG AAG ACG AT-3′
M2 reverse upper 5′-CGA ATG CTC TGA GTC ATC AT-3′
M9 reverse upper 5′-TGC ACT CTC TTT GTC ACC AT-3′
ORF1005 ORF1005 reverse 5′-ATC CAT AAT AGC ATC CAT CAT-3′
M9 reverse lower 5′-GAG AAT CAT CGC CGA AGG G-3′
sul1 sul1 reverse 5′-GCT CAA GAA AAA TCC CAT CCC C-3′
M2 reverse lower 5′-GCG GCG AAA ATC GTA ACC CA-3′
M9 reverse lower 5′-GAG AAT CAT CGC CGA AGG G-3′
ORF1 M3 int upp 5′-TCA CCC AGC CTC AAC CTA AG-3′
ORF1 pol M3 5′-GCA CCG ACA CCC TCA CAC CT-3′
a

Y = C or T; R = A or G.

b

tnp, transposase.