TABLE 2.
PCR target | Primer name | Primer sequencea |
---|---|---|
blaCTX-M (CTX-M-1 group) | M13 upper | 5′-GGT TAA AAA ATC ACT GCG TC-3′ |
M13 lower | 5′-TTG GTG ACG ATT TTA GCC GC-3′ | |
blaCTX-M (CTX-M-2 group) | M25 upper | 5′-ATG ATG ACT CAG AGC ATT CG-3′ |
M25 lower | 5′-TGG GTT ACG ATT TTC GCC GC-3′ | |
blaCTX-M (CTX-M-9 group) | M9 upper | 5′-ATG GTG ACA AAG AGA GTG CA-3′ |
M9 lower | 5′-CCC TTC GGC GAT GAT TCT C-3′ | |
blaTEM | OT3 | 5′-ATG AGT ATT CAA CAT TTC CG-3′ |
OT4 | 5′-CCA ATG CTT AAT CAG TGA GG-3′ | |
blaCMY | CF1 | 5′-ATG ATG AAA AAA TCG TTA TGC-3′ |
CF2 | 5′-TTG TAG CTT TTC AAG AAT GCG C-3′ | |
tnpISEcp1b | ISEcp1 | 5′-AAA AAT GAT TGA AAG GTG GT-3′ |
MA1 reverse | 5′-ACY TTA CTG GTR CTG CAC AT-3′ | |
tnpIS26 | IS26 | 5′-AGC GGT AAA TCG TGG AGT GA-3′ |
MA1 reverse | 5′-ACY TTA CTG GTR CTG CAC AT-3′ | |
IS903 | IS903 reverse | 5′-CGG TTG TAA TCT GTT GTC CA-3′ |
M1 IS903 | 5′-CGT CGG CGG CTA AAA TCG TC-3′ | |
M9 IS903 | 5′-CTA CGG CAC CAC CAA TGA TA-3′ | |
ORF513 | ORF513 | 5′-TGG AAG AGG GCG AAG ACG AT-3′ |
M2 reverse upper | 5′-CGA ATG CTC TGA GTC ATC AT-3′ | |
M9 reverse upper | 5′-TGC ACT CTC TTT GTC ACC AT-3′ | |
ORF1005 | ORF1005 reverse | 5′-ATC CAT AAT AGC ATC CAT CAT-3′ |
M9 reverse lower | 5′-GAG AAT CAT CGC CGA AGG G-3′ | |
sul1 | sul1 reverse | 5′-GCT CAA GAA AAA TCC CAT CCC C-3′ |
M2 reverse lower | 5′-GCG GCG AAA ATC GTA ACC CA-3′ | |
M9 reverse lower | 5′-GAG AAT CAT CGC CGA AGG G-3′ | |
ORF1 | M3 int upp | 5′-TCA CCC AGC CTC AAC CTA AG-3′ |
ORF1 pol M3 | 5′-GCA CCG ACA CCC TCA CAC CT-3′ |
Y = C or T; R = A or G.
tnp, transposase.