Table 5. MiRNA predictions for target genes associated with significant coronary disease using TARGETSCAN.
Individual miRNAs target genes identified as significantly different between patients with and without significant coronary disease were selecting using the context score, a sum of; site-type contribution, 3’ pairing contribution, local AU contribution, and position contribution. The lowest scores show highest predictions.
Target gene | Gene name/miRNA Name | Total Context Score |
---|---|---|
hsa-miR-494* | ||
SOCS6 | Suppressor of cytokine signaling 6 | -1.06 |
HMGCS1 | 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) | -0.88 |
COL6A6 | Collagen type VI alpha 6 | -0.64 |
BCAP29 | B-cell receptor-associated protein 29 | -0.53 |
SCARB2 | Scavenger receptor class B, member 2 | -0.52 |
IGF1R | Insulin-like growth factor 1 receptor | -0.31 |
F11R | F11 receptor | -0.41 |
hsa-miR-490-3p* | ||
LEP | Leptin | -0.32 |
IL1RAP | Interleukin 1 receptor accessory protein | -0.31 |
CD63 | CD63 molecule | -0.29 |
TGFBR1 | Transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kDa) | -0.21 |
ADIPOR2 | Adiponectin receptor 2 | -0.2 |
MEF2D | Myocyte enhancer factor 2D | 0 |
hsa-miR-769-3p* | ||
FAM130A1 | Family with sequence similarity 130, member A1 | -0.4 |
SHPK | Sedoheptulokinase | -0.39 |
KCNA5 | Potassium voltage-gated channel, shaker-related subfamily, member 5 | -0.35 |
MARCKS | Myristoylated alanine-rich protein kinase C substrate | -0.25 |
PBRM1 | Polybromo 1 | -0.24 |
ISOC2 | Isochorismatase domain containing 2 | -0.23 |
MYCL1 | V-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) | -0.23 |
KPNA6 | Karyopherin alpha 6 (importin alpha 7) | -0.2 |
KDSR | 3-ketodihydrosphingosine reductase | -0.17 |
COLEC12 | Collectin sub-family member 12 | -0.15 |
TSPAN1 | Tetraspanin 1 | -0.15 |
PIM2 | Pim-2 oncogene | -0.11 |
KIAA1128 | Family with sequence similarity 190, member B (FAM190B) | -0.07 |