Table 2.
Names and sequences of COL1A1 and COL1A2 3'UTR indel targeting siRNAs
| Name | Target | Sequence | Strand |
|---|---|---|---|
| si_A1_i |
COL1A1 allele carrying an insertion |
GAAGGGCCAAGCACGACAAuu | Sense strand |
| ucCUUCCCGGUUCGUGCUGUU | Anti sense strand | ||
| si_A1_ni |
COL1A1 allele not carrying an insertion |
GAAGGGCCACGACAAAGCAuu | Sense strand |
| uuCUUCCCGGUGCUGUUUCGU | Anti sense strand | ||
| si_A2_i |
COL1A2 allele carrying an insertion |
CCCAAAGUUGUCCUCUUCUuu | Sense strand |
| gcGGGUUUCAACAGGAGAAGA | Anti sense strand | ||
| si_A2_ni |
COL1A2 allele not Carrying an insertion |
CCCAAAUCUUCUUCAGAUUuu | Sense strand |
| acGGGUUUAGAAGAAGUCUAA | Anti sense strand |
Four siRNAs were designed to target the region surrounding the four base pair indel rs3840870 in COL1A1 and the seven base pair indel rs3917 in COL1A2. One siRNA was created to target each allele of a heterozygous individual. Each strand had a two-nucleotide 3'-overhang, indicated by lower-case letters. Denotation, sense and active anti sense strand for each siRNA are displayed in the table.