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. 2013 Aug 13;10(10):1333–1343. doi: 10.7150/ijms.5774

Table 2.

Names and sequences of COL1A1 and COL1A2 3'UTR indel targeting siRNAs

Name Target Sequence Strand
si_A1_i COL1A1 allele
carrying an insertion
GAAGGGCCAAGCACGACAAuu Sense strand
ucCUUCCCGGUUCGUGCUGUU Anti sense strand
si_A1_ni COL1A1 allele not
carrying an insertion
GAAGGGCCACGACAAAGCAuu Sense strand
uuCUUCCCGGUGCUGUUUCGU Anti sense strand
si_A2_i COL1A2 allele
carrying an insertion
CCCAAAGUUGUCCUCUUCUuu Sense strand
gcGGGUUUCAACAGGAGAAGA Anti sense strand
si_A2_ni COL1A2 allele not
Carrying an insertion
CCCAAAUCUUCUUCAGAUUuu Sense strand
acGGGUUUAGAAGAAGUCUAA Anti sense strand

Four siRNAs were designed to target the region surrounding the four base pair indel rs3840870 in COL1A1 and the seven base pair indel rs3917 in COL1A2. One siRNA was created to target each allele of a heterozygous individual. Each strand had a two-nucleotide 3'-overhang, indicated by lower-case letters. Denotation, sense and active anti sense strand for each siRNA are displayed in the table.