Table 2.
Codon | Species | Primer sequences (5′–3′) | T°ann (°C) |
---|---|---|---|
167 | A. lumbricoides | Forward: ACTCGCTTGGTGGAG | 58.4 |
Reverse: CAACCAACTGATGAACGGAC | |||
T. trichiura | Forward: CCTCGGCGGCGGAACTG | 56.4 | |
Reverse: GGTGGACTGACAGAGTTGC | |||
N. americanus | Forward: TGACTGTCTCCAGGTAATTCG | 58 | |
Reverse: CGATGATACGCGGGATG | |||
198 | A. lumbricoides | Forward: CCGTGAAGAATACCCCGACA | 58.7 |
Reverse: TATGTGGGATTTGTAAGCTTCAG | |||
T. trichiura | Forward: TTTCAGATACAGTTGTAGAACC | 57 | |
Reverse: CAAATGATTTAAGTCTCCG | |||
N. americanus | Forward: GTTTCCGACACTGTGGTTGAG | 59 | |
Reverse: AGTTCGTTACTAGCCAGCTCACC | |||
200 | N. americanus | (same as position 198) |
SNP = single nucleotide polymorphism; STH = soil-transmitted helminth; T°ann = primer annealing temperature.