TABLE 1.
16S rRNA-targeted oligonucleotide probes
| Probe (specificity) | Sequence from 5′ to 3′ end | OPD codea | Reference |
|---|---|---|---|
| EUB 338 (Bacteria) | GCT GCC TCC CGT AGG AGT | S-D-Bact-0338-a-A-18 | 1 |
| NON EUB 338 | ACA TCC TAC GGG AGG C | S-D-bact-0338-a-S-18 | 26 |
| Bif 164 (Bifidobacterium) | CAT CCG GCA TTA CCA CCC | S-G-Bif-0164-b-A-18 | 13 |
| Enter 1432 (Enterobacteriaceae) | GTT TTG CAA CCC ACT | S-G-Enter-1432-a-A-15 | 22 |
| Chis 150 (C. histolyticaum) | TTA TGC GGT ATT AAT CT(C/T) CCT TT | S-*-Chis-0150-a-A-23 | 7 |
| Bact 1080 (Bacteroides) | GCA CTT AAG CCG ACA CCT | S-*-Bacto-1080-a-A-18 | 3 |
| Erec 482 (C. coccoides-E. rectale) | GCT TCT TAG TCA GGT ACC G | S-*-Erec-0482-a-A-19 | 7 |
| Fprau 645 (F. prausnitzii) | CCT CTG CAC TAC TCA AGA AAA AC | S-*-Fprau-0645-a-A-23 | 24 |
| Lab 158 (Lactobacillus-Enterococcus) | GGT ATT AGC A(C/T)C TGT TTC CA | S-*-Lacto-0158-a-A-20 | 8 |
a
OPD code, Oligonucleotide Probe Database code.