Skip to main content
. 2013 Aug 26;8(8):e72298. doi: 10.1371/journal.pone.0072298

Table 2. Top 30 up and down regulated genes in liver tissues collected from boars with high and low skatole levels in backfat.

Gene Orthologue gene description Reference ID log2Fold Change p-adj.
SERPINA12 Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin),member 12 XM_003128704.2 5.82 4.73e-06
KRT8 Keratin 8 NM_001159615.1 4.33 6.03e-05
TNFRSF12A Tumor necrosis factor receptor superfamily, member 12A NM_001142839.1 3.75 2.05e-09
HSPA8 Heat shock 70 kDa protein 8 NM_001243907.1 3.70 0.004
HSP71 Heat shock 70 kDa protein 8 XM_003129961.3 3.70 0.004
GSTO2 Glutathione S-transferase omega 2 XM_001927288.3 3.56 2.55e-07
CDKN1A Cyclin-dependent kinase inhibitor 1A (p21, Cip1) XM_001929558.1 3.44 1.95e-12
HSP90AA1 Heat shock protein 90 kDa alpha (cytosolic), class A member 1 NM_213973.1 3.21 0.0027
ALDH3B1 Aldehyde dehydrogenase 3 family, member B1 XM_003480660.1 3.15 4.06e-08
DLST Dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) NM_214397.1 3.11 3.30e-10
UGT1A3 UDP glucuronosyltransferase 1 family, polypeptide A3 XM_003133742.3 3.06 3.55e-07
DHRS4 Dehydrogenase/reductase (SDR family) member 4 NM_214019.1 3.02 0.0039
SLC5A6 Solute carrier family 5 (sodium-dependent vitamin transporter), member 6 XM_003125293.3 2.97 0.0035
PMM1 Phosphomannomutase 1 NM_001184895.1 2.90 1.56e-09
NKIRAS2 NFKB inhibitor interacting Ras-like protein 2 XM_003358038.1 2.89 5.60e-05
FOS FBJ murine osteosarcoma viral oncogene homolog NM_001123113.1 2.86 3.21e-08
CYP4A25 Cytochrome P450 4A24 XM_003128016.3 2.81 2.81e-08
CYP4A24 Cytochrome P450 4A24 XM_003356476.2 2.76 2.03e-05
ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide XM_001929410.2 2.74 0.00012
TUBA1A Tubulin, alpha 1a XM_003355375.1 2.71 1.50e-07
SLC25A5 Solute carrier family 25 (mitochondrial carrier; adenine nucleotidetranslocator), member 5 XM_001927440.2 2.71 0.00104
ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle NM_001185142.1 2.66 2.88e-05
SDHD Succinate dehydrogenase complex, subunit D, integral membrane protein NM_001097516.1 2.66 3.34e-07
CRYAB Crystallin, alpha B XM_003357294.1 2.62 3.21e-06
UQCRFS1 Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 XM_003127002.1 2.63 4.62e-06
PGM1 Phosphoglucomutase 1 XM_003127945.2 2.60 6.22e-06
SLC22A7 Solute carrier family 22 (organic anion transporter), member 7 NM_001044617.1 2.60 2.81e-08
CYP4B24 Cytochrome P450 4B24 XM_003482090.1 2.58 2.35e-06
SLC25A25 Solute carrier family 25 (mitochondrial carrier; phosphate carrier),member 25 NM_001164510.1 2.53 1.351e-05
COX5A Cytochrome c oxidase subunit Va XM_003482239.1 2.47 0.00031
PRDX1 Peroxiredoxin 1 XM_003128040.1 2.47 8.22e-05
ACSL5 Acyl-CoA synthetase long-chain family member 5 XM_003359369.1 2.38 0.0001684
MDH2 Malate dehydrogenase 2, NAD (mitochondrial) NM_001244153.1 2.34 5.91e-05
MDH1 Malate dehydrogenase 1, NAD (soluble) NM_213874.1 2.30 5.89e-06
TUBA1B Tubulin, alpha 1b NM_001044544.1 2.16 0.00018
IDH1 Isocitrate dehydrogenase 1 (NADP+), soluble XM_003483721.1 2.14 0.00043
DHRS1 Dehydrogenase/reductase (SDR family) member 1 XM_003128543.1 2.11 3.02e-05
HSPA5 Heat shock 70 kDa protein 5 (glucose-regulated protein, 78 kDa) XM_001927795.4 2.11 0.0037
PGM3 Phosphoglucomutase 3 XM_001924419.2 2.05 9.56e-06
SLC25A1 Solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 NM_001190189.1 2.03 0.0022
GSTM2 Glutathione S-transferase mu 2 NM_001078684.1 2.02 0.0017
TNFAIP1 Tumor necrosis factor, alpha-induced protein 1 (endothelial) XM_003483067.1 1.91 0.00066
HSD3B7 Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroiddelta-isomerase 7 XM_003124487.1 1.84 0.0012
SEC13 SEC13 homolog (S, cerevisiae) XM_003483983.1 −1.93 0.0022
ZNF238 Zinc finger protein 238 XM_003357648.1 −1.93 0.0029
HDAC9 Histone deacetylase 9 XM_003357464.1 −1.94 0.0017
CEBPA CCAAT/enhancer binding protein (C/EBP), alpha XM_003127015.1 −1.94 0.0009
GUCY1A2 Guanylate cyclase 1, soluble, alpha 2 XM_003130093.3 −2.00 0.0036
LAMP1 Lysosomal-associated membrane protein 1 NM_001011507.1 −2.10 0.00029
SEMA3E Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E XM_003130220.3 −2.37 0.0044
ZNF829 Zinc finger protein 829 XM_003127093.3 −2.40 0.00257
GABARAPL1 GABA(A) receptor-associated protein like 1 XM_003126479.3 −2.46 8.44e-05
UNC13D Unc-13 homolog D (C, elegans) XM_003131192.1 −2.54 0.00021
HSD17B2 Hydroxysteroid (17-beta) dehydrogenase 2 NM_001167649.1 −2.78 0.0032
CXCL9 Chemokine (C-X-C motif) ligand 9 NM_001114289.2 −2.80 0.0002
PNOC Prepronociceptin NM_001244476.1 −2.81 0.00085
CDK5 Cyclin-dependent kinase 5 XM_003480595.1 −2.82 0.00017
PHF7 PHD finger protein 7 XM_001928213.2 −2.83 0.00345
SOCS2 Suppressor of cytokine signaling 2 NM_001097461.1 −2.96 0.00054
PCLO Piccolo presynaptic cytomatrix protein XM_003357489.2 −2.97 0.0006
SLC9A4 Solute carrier family 9 (sodium/hydrogen exchanger), member 4 XM_003354711.1 −3.36 0.0006
GABRG2 Gamma-aminobutyric acid (GABA) A receptor, gamma 2 XM_003359825.1 −3.40 0.0006
LOC100737161 LOC100737161 XM_003482919.1 −3.50 0.0001
LOC100512296 LOC100512296 XM_003129119.2 −4.07 1.01e-07
LOC100155734 LOC100155734 XM_001927727.2 −4.27 0.002
LOC100739739 LOC100739739 XM_003482938.1 −5.02 0.0011
LOC100625674 LOC100625674 XM_003359731.2 −5.89 0.0012
LOC100737759 LOC100737759 XM_003482870.1 −6.80 7.76e-05