Table 4. Distribution of large repeat loci in the mitochondrial genome of Ganoderma Lucidum.
No. | Type | Size(bp) | Start (Unit 1) | Location (Unit 1) | Start (Unit 2) | Location (Unit 2) | |
F1 | Fa | 244 | 19794 | IGSd (trnS, orf1) | 51844 | IGS (trnS, nad2), CDSe (nad2) | |
F2 | F | 193 | 12003 | IGS (nad4, trnA) | 47271 | IGS (cox2, rps3) | |
F3 | F | 139 | 19632 | IGS (atp6, orf1) | 51681 | IGS (atp8, trnS), CDS (trnS) | |
F4 | F | 48 | 30762 | IGS (rnl, cox3) | 56384 | CDS (trnC), IGS (trnC, trnR) | |
F5 | F | 40 | 28536 | Intron (rnl) | 43579 | Intron (rns) | |
F6 | F | 34 | 30726 | IGS (rnl, cox3) | 56344 | CDS (trnC) | |
F7 | F | 34 | 2637 | Intron (cox1) | 8564 | Intron (cox1) | |
F8 | F | 31 | 2677 | Intron (cox1) | 33564 | Intron (cox3) | |
I1 | Ib | 31 | 13574 | IGS (nad4, trnA) | 31107 | IGS (rnl, cox3) | |
I2 | I | 31 | 27481 | Intron (rnl) | 56050 | CDS (atp9) | |
T1 | Tc | 15×3f | 47867 | IGS (rps3, nad6) | |||
T2 | T | 18×2 | 11223 | CDS (nad4) | |||
T3 | T | 26×3 | 15761 | IGS (trnM, atp6) |
F: forward (direct) repeat;
I: inverted (palindromic) repeat;
T: tandem repeat;
IGS: intergenic spacer regions;
CDS: coding DNA sequence regions.
For the size of the tandem repeat, ×3 or ×2 means that the same unit repeats for three or two times, respectively. For the IGS and CDS regions, the names of the neighboring genes and the genes are shown in parentheses, respectively. The names of the intron regions are also shown.