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. 2013 Aug 26;8(8):e72038. doi: 10.1371/journal.pone.0072038

Table 4. Distribution of large repeat loci in the mitochondrial genome of Ganoderma Lucidum.

No. Type Size(bp) Start (Unit 1) Location (Unit 1) Start (Unit 2) Location (Unit 2)
F1 Fa 244 19794 IGSd (trnS, orf1) 51844 IGS (trnS, nad2), CDSe (nad2)
F2 F 193 12003 IGS (nad4, trnA) 47271 IGS (cox2, rps3)
F3 F 139 19632 IGS (atp6, orf1) 51681 IGS (atp8, trnS), CDS (trnS)
F4 F 48 30762 IGS (rnl, cox3) 56384 CDS (trnC), IGS (trnC, trnR)
F5 F 40 28536 Intron (rnl) 43579 Intron (rns)
F6 F 34 30726 IGS (rnl, cox3) 56344 CDS (trnC)
F7 F 34 2637 Intron (cox1) 8564 Intron (cox1)
F8 F 31 2677 Intron (cox1) 33564 Intron (cox3)
I1 Ib 31 13574 IGS (nad4, trnA) 31107 IGS (rnl, cox3)
I2 I 31 27481 Intron (rnl) 56050 CDS (atp9)
T1 Tc 15×3f 47867 IGS (rps3, nad6)
T2 T 18×2 11223 CDS (nad4)
T3 T 26×3 15761 IGS (trnM, atp6)
a

F: forward (direct) repeat;

b

I: inverted (palindromic) repeat;

c

T: tandem repeat;

d

IGS: intergenic spacer regions;

e

CDS: coding DNA sequence regions.

f

For the size of the tandem repeat, ×3 or ×2 means that the same unit repeats for three or two times, respectively. For the IGS and CDS regions, the names of the neighboring genes and the genes are shown in parentheses, respectively. The names of the intron regions are also shown.