Table 3. Distribution of Ribosomal Protein Genes in the Eight Clusters of DEGs Identified in Arabidopsis Protoplasts.
| Cluster | RP Number | 1 | 2 | 3 | 4 | 5 | AGI Identifier/Name |
|---|---|---|---|---|---|---|---|
| C1 | 0 | Up | nc | nc | nc | nc | |
| C2 | 6 | Dn | nc | nc | nc | nc | RPL22A, RPP2C, RPS15aE, RPS15F, RPS17C, RPS19B |
| C3 | 6 | nc | Up | nc | nc | nc | RPL10B, RPL39B, RPL7D, RPL9D, RPP0C, RPSaB |
| C4 | 0 | nc | Dn | nc | nc | nc | |
| C5 | 2 | Up | Dn | nc | nc | nc | RPL18aA, RPL10C (SAG24) |
| C6 | 101 | Dn | Up | nc | nc | nc | RPS18A (PFL1), (RPS13A (PFL2),(RPL24 (STV1), L10aP (PIGGYBACK1), RP1 (EMB2207), AT3G04400 (EMB2171), AT3G48930 (EMB1080), RPS6B (EMB3010), AT1G58380 (XW6) (see Supplemental Table 1 online, columns AW and BQ, for a complete list) |
| C7 | 0 | nc | nc | Up | Up | nc | |
| C8 | 0 | nc | nc | nc | nc | Up | |
| Others | 15 | nc | nc | nc | nc | nc | |
| Total DEGs | 130 | nc | nc | nc | nc | nc |
Up, upregulation; Dn, downregulation; PFL, pointed first leaf; RPL, RP large subunit; RPS, RP small subunit; SAG, senescence-associated gene; STV, short valve; EMB, embryo defective; nc, no change in expression.