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. 2013 Jul 11;25(7):2560–2572. doi: 10.1105/tpc.112.108688

Figure 5.

Figure 5.

Phylogenetically Conserved Regions in the VDD Promoter and Multiple Sequence Alignment Analysis.

(A) Pairwise alignments of the A. thaliana VDD promoter to putatively orthologous sequences of A. lyrata, C. rubella, B. rapa, T. halophila, and A. alpina, respectively, shown as VISTA plots. Light red indicates regions where a sliding window of at least 75 bp has >70% identity. Vertical lines indicate the position of the three CArG boxes within the A. thaliana VDD promoter relative to the transcriptional start site (arrow).

(B) Multiple sequence alignment of the three putative CArG box or CArG box-like sequences found within the same position of the VDD promoter of A. thaliana and orthologous genes in the five Brassicaceae, not strictly considering the CC(A/T)6-8GG (allowing one mismatch) rule.