Table 2.
The primers, PCR-RFLP and CRS-PCR analysis for XRCC1 genetic polymorphisms
SNPs | Primer sequences | Amplification fragment (bp) | Region | Annealing temperature (°C) | Genotype method | Restriction enzyme | Genotype (bp) |
---|---|---|---|---|---|---|---|
c.910A>G | 5'-GACTGCTGGGTCTGAGGGAGG-3' | 238 | Exon9 | 63.2 | PCR-RFLP | HhaI | AA:238 |
5'-TCAGCACCACTACCACACCCTG-3' | AG:238,166,72 | ||||||
GG:166,72 | |||||||
c.1804C>A | 5'-AGGACAATATGAGTGACCGGGTTC-3' | 209 | Exon17 | 64.0 | CRS-PCR | MaeII | CC:209 |
5'-CGAACGAATGCCAGGGACG-3' | CA:209,192,17 | ||||||
AA:192,17 |
Note: SNPs, single nucleotide polymorphisms; PCR, polymerase chain reaction; PCR-RFLP, PCR-restriction fragment length polymorphism; CRS-PCR, created restriction site PCR; Underlined nucleotides mark nucleotide mismatches enabling the use of the selected restriction enzymes for discriminating sequence variations.