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. 2013 Aug 9;9(7):753–758. doi: 10.7150/ijbs.6783

Table 2.

The primers, PCR-RFLP and CRS-PCR analysis for XRCC1 genetic polymorphisms

SNPs Primer sequences Amplification fragment (bp) Region Annealing temperature (°C) Genotype method Restriction enzyme Genotype (bp)
c.910A>G 5'-GACTGCTGGGTCTGAGGGAGG-3' 238 Exon9 63.2 PCR-RFLP HhaI AA:238
5'-TCAGCACCACTACCACACCCTG-3' AG:238,166,72
GG:166,72
c.1804C>A 5'-AGGACAATATGAGTGACCGGGTTC-3' 209 Exon17 64.0 CRS-PCR MaeII CC:209
5'-CGAACGAATGCCAGGGACG-3' CA:209,192,17
AA:192,17

Note: SNPs, single nucleotide polymorphisms; PCR, polymerase chain reaction; PCR-RFLP, PCR-restriction fragment length polymorphism; CRS-PCR, created restriction site PCR; Underlined nucleotides mark nucleotide mismatches enabling the use of the selected restriction enzymes for discriminating sequence variations.