Table 2.

Genotyping and switching errors (%) for varying coverages on HapMap dataset

Coverage	1×	2×	4×	6×	8×	10×
Genotyping Error
BEAGLE	4.21	1.94	0.59	0.22	0.10	0.04
IMPUTE*	3.59	1.53	0.56	0.30	0.17	0.12
HARSH	3.42	1.28	0.28	0.08	0.04	0.02
Switching Error
BEAGLE	0.97	1.04	1.05	1.11	1.23	1.23
IMPUTE*	0.82	0.87	0.90	0.94	0.97	0.98
HARSH	0.72	0.67	0.62	0.63	0.65	0.65

Note: Read length is fixed to be 1000 bp.