Table 3.

Genotyping and switching errors (%) for varying read lengths on HapMap dataset

Read length	1000 bp	2000 bp	3000 bp	4000 bp
Genotyping error
BEAGLE	0.59	0.67	0.74	0.79
IMPUTE*	0.56	0.70	0.77	0.85
HARSH	0.28	0.37	0.40	0.48
Switching error
BEAGLE	1.05	1.10	1.07	1.07
IMPUTE*	0.90	0.93	0.94	0.94
HARSH	0.62	0.57	0.49	0.48

Note: Coverage is fixed to be 4×.