Table 1.
Per read accuracy for known bacteria shown in percentages
| Application | Database | Species | Genus | Family | Order | Wrong | No label | No hits |
|---|---|---|---|---|---|---|---|---|
| LMAT | kFull | 74.2 (99.7) | 6.7 (99.9) | 1.4 (100) | 0.4 (100) | 0.3 | 10.1 | 0 |
| LMAT | kML | 40.4 (99.8) | 4.1 (99.9) | 0.8 (100) | 0.1 (100) | 0.2 | 51.3 | 17.7 |
| PhymmBL | Published | – (95.4) | – | – | – | 4.6 | – | – |
| PhymmBL | GenBank | 88.3 (92.5) | – | – | – | 7.5 | 11.7 | – |
| Genometa | Published | 66.7 (92.2) | – | – | – | 7.8 | 33.3 | – |
Note: Per rank accuracy shows two values—percentage of all reads correctly labeled by rank (species, genus, family or order) or incorrectly labeled (Wrong) or failed to be assigned a label (No label and No hits). In parentheses shows percentage of reads assigned a label at the specified rank that were correct. No label = reads with no taxonomically informative label assigned and includes No hits, No hits = reads with no k-mer matches to the database. – = entry not applicable.