Table 3.
The 10 genomic regions with the highest zCNE density are all associated with transcription factors
| Locus danRer7 |
% Bases in zCNEs | Putative target gene(s) | ||
|---|---|---|---|---|
| chr | Window start | Window end | ||
| chr4 | 5805000 | 5905000 | 18.83% | foxp2 |
| chr24 | 23860000 | 23960000 | 17.92% | zfhx4 |
| chr23 | 29215000 | 29315000 | 16.89% | casz1 |
| chr7 | 28480000 | 28580000 | 16.74% | sox6 |
| chr7 | 47940000 | 48040000 | 15.50% | znf536 |
| chr7 | 47810000 | 47910000 | 15.40% | ccne & znf536 |
| chr9 | 31905000 | 32005000 | 15.12% | dachd |
| chr7 | 37245000 | 37345000 | 14.33% | irx5a |
| chr7 | 70460000 | 70560000 | 14.21% | zfhx3 |
| chr12 | 44145000 | 44245000 | 13.99% | ebf3 |
Each window is 100 kb. The nearest gene(s) is listed. See Supplementary Table S7 for a longer table.