Table 3.
Bioinformatic analysis of D. discoideum PPR protein homologs in other cellular slime moulds. The probability of helical repeats being PPR and the predicted number of motifs were determined using TPRpred.
| Organism | NCBI protein accession number | PPR probability (%) | Number of PPR motifs |
|---|---|---|---|
| D. purpureum | XP_003289503 | 100 | 9 |
| D. purpureum | XP_003288427 | 100 | 9 |
| D. purpureum | XP_003290170 | 100 | 12 |
| D. purpureum | XP_003284803 | 0 | 0 |
| D. purpureum | XP_003288663 | 100 | 5 |
| D. purpureum | XP_003294037 | 100 | 6 |
| D. purpureum | XP_003284179 | 100 | 5 |
| D. purpureum | XP_003286839 | 100 | 9 |
| D. purpureum | XP_003285976 | 100 | 15 |
| D. purpureum | XP_003291714 | 0.89 | 3 |
| D. purpureum | XP_003293255 | 99.96 | 9 |
| D. purpureum | XP_003286762 | 0 | 0 |
| P. pallidum | EFA79424 | 100 | 9 |
| P. pallidum | EFA76720 | 100 | 13 |
| P. pallidum | EFA82229 | 100 | 3 |
| P. pallidum | EFA79525 | 100 | 8 |
| P. pallidum | EFA75260 | 100 | 5 |
| D. fasciculatum | EGG14329 | 100 | 9 |
| D. fasciculatum | EGG22645 | 100 | 12 |
| D. fasciculatum | EGG13534 | 97.20 | 3 |
| D. fasciculatum | EGG15096 | 100 | 8 |
| D. fasciculatum | EGG14213 | 100 | 6 |