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. 2013 Sep;87(18):10368–10380. doi: 10.1128/JVI.01313-13

Table 1.

Creation of viral variants by site-directed mutagenesisa

Variant Modification Template plasmid Forward primer
pB-C3-SbfI Create SbfI site pB-C3 5′CCCTATAGTACAGAACCTGCAGGGGCAAATGGTGCATCAG3′
pB-C3-SbfI-MscI Create MscI site pB-C3-SbfI 5′GTCAGGGAGTGGGGGGACCTGGCCATAAAGCAAGAG3′
pB-NL-C3-R D248G pB-NL-C3-SbfI-MscI 5′GTACCCTTCGGGAACAAATAGGTTGGATGACAAGTAATCCACC3′
pB-NL-C3-0 R244Q pB-NL-C3-R 5′CAGGAACTACTAGTACCCTTCAGGAACAAATAGGTTGGATGAC3′
pB-NL-C3-NR T242N pB-NL-C3-R 5′CATAGCAGGAACTACTAGTAACCTTCGGGAACAAATAGGTTGG3′
pB-NL-C3-N T242N pB-NL-C3-0 5′CATAGCAGGAACTACTAGTAACCTTCAGGAACAAATAGGTTGG3′
a

The SbfI (CCTGCAGG) and MscI (TGGCCA) restriction sites or the codon modified by mutagenesis are underlined. The nucleotides modified in the target sequences are shown in bold. Only the forward primer is shown in the table; the reverse primer was the reverse complement of the forward primer.