Table 3.

Quality control summary statistics for each RNA-seq sample generated via FastQC

Sample	Sample yield (Mb)	% PFa clusters	Mismatch rate (%)	% bases ≥Q30b (PF)	Mean quality score (PF)	Total no. of reads	No. of reads with at least one reported alignment	% R1 reads with at least one reported alignment
EGDe WTc rhamnose-1	2,672	93.86	0	94.66	37.27	56,932,882	43,535,535	76.5
EGDe WT rhamnose-2	2,297	94.15	0	94.87	37.36	48,790,452	34,139,379	70.0
EGDe 0753 rhamnose-1	1,998	94.30	0	94.76	37.31	42,363,954	27,339,106	64.5
EGDe 0753 rhamnose-2	2,614	93.98	0	94.70	37.32	55,633,416	41,570,106	74.7

^aPF, purity filtered.

^bQ30, 99.9% accurate.

^cWT, wild type.