Table 1.
Asn-Asp-Asnb | No. of polymorphisms in the linker region sequence of isolates from the following country: |
Proportion (%) in each class linked to the following pfmdr1 allelec: |
||||||
---|---|---|---|---|---|---|---|---|
Sudan | Kenya | Burkina | The Gambia | All four countries (total) | 86Y | 184F | 1246Yd | |
7-2-09 | 39 | 10 | 29 | 4 | 82 | 52 | 73 | 4 (47) |
7-2-10 | 6 | 34 | 12 | 1 | 53 | 65 | 22 | 50 (40) |
7-2-07 | 0 | 8 | 12 | 0 | 20 | 0 | 55 | 0 (8) |
8-2-09 | 0 | 3 | 13 | 0 | 16 | 69 | 88 | 0 (3) |
7-2-08 | 0 | 1 | 4 | 6 | 11 | 18 | 64 | 0 (1) |
7-0-02 | 0 | 7 | 2 | 0 | 9 | 33 | 44 | 0 (7) |
7-0-04 | 0 | 8 | 0 | 0 | 8 | 50 | 100 | 50 (8) |
7-0-01 | 1 | 6 | 0 | 0 | 7 | 86 | 14 | 71 (7) |
7-2-11 | 0 | 1 | 6 | 0 | 7 | 14 | 57 | 100 (1) |
7-2-06 | 0 | 0 | 1 | 5 | 6 | 0 | 83 | |
8-2-08 | 0 | 0 | 0 | 5 | 5 | 100 | 100 | |
8-1-09 | 0 | 0 | 2 | 1 | 3 | 0 | 0 | |
5-2-09 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | |
7-0-03 | 1 | 0 | 1 | 0 | 2 | 50 | 50 | 0 (1) |
7-0-00 | 0 | 0 | 0 | 1 | 1 | 0 | 100 | |
7-0-06 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 (1) |
7-1-11 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 (1) |
7-2-01 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | |
7-2-04 | 0 | 0 | 1 | 0 | 1 | 0 | 100 | |
7-2-05 | 0 | 0 | 0 | 1 | 1 | 0 | 100 | |
7-2-12 | 0 | 0 | 1 | 0 | 1 | 100 | 100 | |
7-2-15 | 0 | 0 | 1 | 0 | 1 | 0 | 100 | |
8-0-00 | 0 | 0 | 0 | 1 | 1 | 100 | 100 | |
8-2-10 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | |
Total | 47 | 80 | 88 | 26 | 241 | 236 | 234 | 125 |
The total number of linker region sequences determined from the different countries and the total number of samples evaluated for each pfmdr1 allele are shown in boldface type.
Numbers of Asn, Asp, and Asn residues in the linker sequence, respectively.
Sequence data at each codon were not available for all isolates. Thus, the denominator for the codon analyses is less than 236 in each case. For codon 1246, only samples from Kenya and Sudan were included in the analysis (see the text).
The number of samples is shown in parentheses.