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. Author manuscript; available in PMC: 2013 Aug 27.
Published in final edited form as: Comput Math Organ Theory. 2012 Dec;18(4):380–403. doi: 10.1007/s10588-011-9101-y

Fig. 8.

Fig. 8

Petri net model specification produced by CMA for the Pseudomonas aeruginosa virulence activation pathway. The Petri net model is composed of a set of variables for the biological entities (places in Petri net formalism) and a set of transition rules. The transitions consist of pre-conditions, post-conditions, and a rate function currently defined as constantFunction. The initial state is defined outside of the model specification