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. 2013 Sep;51(9):2869–2874. doi: 10.1128/JCM.00488-13

Fig 1.

Fig 1

Multiple sequence alignment of the selected SCCmec-orfX junction of various MRSA clones. type-I, type I SCCmec (GenBank accession no. AB033763); type-II, type II SCCmec (GenBank accession no. D86934); type-III, type III SCCmec (GenBank accession no. AB047089); type-IV, type IV SCCmec (GenBank accession no. AB425823); type-IV1, type IVa SCCmec (GenBank accession no. AB063172); type-IV2, type IVb SCCmec (GenBank accession no. AB063173); type-IV3, type IVc SCCmec (GenBank accession no. AB096217); type-IVg, type IVg SCCmec (GenBank accession no. DQ106887); type-V, type V SCCmec (GenBank accession no. AB121219); type-VI, type VI SCCmec (GenBank accession no. AF411935); type-VII, type VII SCCmec (GenBank accession no. AB373032); 921015-ST45-55C, 921032-ST45-55C, 128050-ST45-55C, and 921103-ST45-55C, CC45 lineage MRSA clones with Tm values of 55°C; 127700-ST398-55C, CC398 lineage MRSA clones with Tm values of 55°C; 128359-ST672-55C, CC672 lineage MRSA clones with Tm values of 55°C; 128505-ST8-59C, CC8 lineage MRSA clones with Tm values of 59°C; 128390-ST22-59C, CC22 lineage MRSA clones with Tm values of 59°C. Numbers indicate nucleotide positions, asterisks indicate nucleotide positions showing consensus among all the selected SCCmec-orfX sequences, and the boxes indicate the nucleotide substitutions.