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. 2013 Aug;79(16):4774–4785. doi: 10.1128/AEM.00998-13

Table 6.

Levels of transcripts encoding proteins that function in the cell wall and in the flagella

Function and Augustus v5.0 identifier Gene Annotated function Log2 fold changea
TiO2 ZnO Ag QDs
Cell wall
    517461 PHC1 Cell wall pherophorin-C-1 0.88 0.14 3.28 0.29
    517016 PHC19 Cell wall pherophorin-C19 0.21 −0.28 3.48 −0.88
    512243 PHC12 Cell wall pherophorin-C12 0.79 0.04 2.45 −0.30
    517021 PHC22 Cell wall pherophorin-C22 1.05 −0.28 4.88 −0.30
    512446 GAS28 Hydroxyproline-rich glycoprotein 1.87 1.00 4.67 0.48
    512449 GAS30 Hydroxyproline-rich glycoprotein 1.34 0.72 5.13 1.44
    518750 Hydroxyproline-rich glycoprotein −1.70 1.36 2.21 −1.15
    517295 Structural constituent of cell wall 1.32 0.21 4.21 −0.04
    520047 Predicted glycoside hydrolase 0.79 0.04 3.04 −1.30
Flagella
    510365 AGG3 Flagellar flavodoxin 1.34 0.46 1.78 2.20
    523252 CDC48 Flagellum associated 1.45 2.36 −1.16 1.51
    518827 DLC1 Flagellar dynein light chain 0.47 0.92 2.28 0.77
    513514 FAP7 Flagellum associated 1.72 0.04 2.26 0.87
    521955 FAP26 Flagellum associated 1.05 0.18 2.50 −0.13
    523078 FAP71 Flagellum associated 2.47 1.22 1.78 1.36
    512516 FAP83 Flagellum associated 1.51 1.09 2.58 0.90
    511879 FAP96 Flagellum associated 2.11 1.18 2.41 0.70
    511324 FAP109 Flagellum associated 1.79 1.53 2.38 1.36
    513604 FAP126 Flagellum associated 2.41 1.41 0.74 1.58
    524055 FAP141 Flagellum associated 0.28 −0.28 2.62 0.70
    513171 FAP169 Flagellum associated 1.70 2.18 2.47 1.19
    522771 FAP205 Flagellum associated 1.01 0.17 2.71 1.00
    524527 FAP207 Flagellum associated 0.98 1.37 2.23 0.59
    514913 FAP236 Flagellum associated 1.64 0.31 2.38 1.16
    520262 FAP258 Flagellum associated 0.64 −0.69 2.54 0.02
    519991 FAP265 Flagellum associated 1.13 0.31 −0.55 2.07
    516031 FAP268 Flagellum associated 0.69 0.14 2.80 −0.08
    521526 FAP283 Flagellum associated 0.21 1.04 2.48 0.70
    517923 FAP293 Flagellum associated 0.85 −0.79 2.38 0.47
    518760 IFT20 Intraflagellar transport 0.95 1.65 2.22 0.70
a

Boldface data indicate transcripts that are elevated or reduced by ≥2 log2 fold in at least one NP transcriptome.