Table 3.

Different transcription levels for A. vinosum genes encoding proteins with established functions in oxidative sulfur metabolism^a

Locus tag	Gene	Annotation	Strand	Avg fold change after growth onb:				Reference(s)
				Sulfide	Thiosulfate	Sulfur	Sulfite
Alvin_0091	tsdA	Thiosulfate dehydrogenase	+	1.11	0.66	1.83	1.72	4
Alvin_0358	sgpB	Sulfur globule protein	+	62.95	5.73	3.07	3.29	44
Alvin_1092	fccB	Flavocytochrome c sulfide dehydrogenase flavin–binding protein	−			1.10	1.42	10
Alvin_1093	fccA	Cytochrome c class I	–	0.13	1.99	0.56	2.28	10
Alvin_1118	sat	Sulfate adenylyltransferase	+	7.60	1.842	0.73	1.72
Alvin_1119	aprM	Hypothetical protein	+	9.66	1.90	0.89	2.42
Alvin_1120	aprB	Adenylylsulfate reductase, β–subunit	+	8.96	1.98	1.04	2.37	66
Alvin_1121	aprA	Adenylylsulfate reductase, α-subunit	+	7.72	2.27	1.10	1.78	66
Alvin_1195	sqrF	Sulfide:quinone oxidoreductase	+	1.90	1.35	1.54	1.90	11
Alvin_1251	dsrA	DsrA	+	97.62	54.54	23.64	3.20	13
Alvin_1252	dsrB	DsrB	+	84.74	41.34	14.10	2.23	13
Alvin_1253	dsrE	DsrE	+	90.13	30.57	8.40	1.52	13, 51
Alvin_1254	dsrF	DsrF	+	35.78	16.58	5.33	0.98	13, 51
Alvin_1255	dsrH	DsrH	+	25.28	8.40	3.29	0.96	13, 51
Alvin_1256	dsrC	DsrC	+	14.24	3.97	2.25	1.18	13, 51
Alvin_1257	dsrM	DsrM	+	19.68	6.23	2.64	1.04	13, 35
Alvin_1258	dsrK	DsrK	+	15.02	6.16	2.82	0.97	13, 35
Alvin_1259	dsrL	DsrL	+	19.22	5.90	3.89	1.35	14, 16
Alvin_1260	dsrJ	DsrJ	+	22.96	5.87	3.37	1.67	5, 14
Alvin_1261	dsrO	DsrO	+	9.70	5.94	2.40	1.03	14, 35
Alvin_1262	dsrP	DsrP	+	17.47	6.67	2.47	1.00	14, 35
Alvin_1263	dsrN	DsrN	+	2.60	2.23		0.55	14, 16
Alvin_1264	dsrR	DsrR	+	1.74	1.30	1.37	1.11	14
Alvin_1265	dsrS	DsrS	+	1.29	1.29	1.10	1.18	14
Alvin_1325	sgpC	Sulfur globule protein	+	11.61	1.94	0.74	5.17	44
Alvin_1905	sgpA	Sulfur globule protein	+	2.26	2.54	2.50	1.29	44
Alvin_2111	soxY	SoxY	+	0.32	1.08	1.58	1.44	6
Alvin_2112	soxZ	SoxZ	+	0.45	0.93	1.71	3.71	6
Alvin_2145	sqrD	Sulfide:quinone oxidoreductase	+	1.31	1.54	1.59	3.28	11
Alvin_2167	soxB	SoxB	−	0.85	1.15	1.72	3.45	6
Alvin_2168	soxX	SoxX	+	1.02	2.02	5.81	3.06	6
Alvin_2169	soxA	SoxA	+	0.90	1.84	4.87	2.36	6
Alvin_2170	soxK	SoxXA-binding protein	+	0.83	1.50	4.25	1.04	6
Alvin_2171	soxL	Sulfur transferase, periplasm	+	0.80	1.20	3.53		6, 12

^aTranscriptional changes of more than 5-fold on at least one sulfur source or of more than 2-fold on all tested sulfur compounds tested are highlighted in bold.

^bThe complete microarray data sets can be found in Table S3 in the supplemental material and in the GEO database (see Materials and Methods).