Table 2.
Specificity values of regulatory modules
| Dataset (number of seq.) | MatrixCatch | CMA | ModuleSearcher | CisModule |
|---|---|---|---|---|
| Breast (24) |
5.29 |
1.65 |
2.90 |
3.66 |
| Heart (68) |
2.60 |
– |
1.38 |
– |
| Kidney (51) |
3.47 |
1.46 |
2.54 |
– |
| Muscle (86) |
1.43 |
– |
1.35 |
– |
| Pancreas (61) |
2.56 |
– |
1.43 |
– |
| Prostate (17) |
9.54 |
6.19 |
2.49 |
6.54 |
| Thyroid (74) | 1.62 | – | 1.40 | – |
Highest values of specificity (C+/C–) shown by the programs in different datasets. None of the programs found modules in the datasets: Cerebellum, Liver, Spleen and Testis.