Table 1. Distribution of REV-related sequences in vertebrate and virus genomes.
No. of Highly Significant Matches Detectedb | |||||
Species/Groupa | LTR | Leader | Gag | Pol | Env |
Mammals | |||||
European hedgehog (Erinaceus europaeus) | — | — | 76 | 166 | — |
Madagascar tenrec (Echinops telfairi) | — | — | — | 5 | — |
Flying fox (Pteropus vampyrus) | — | — | 7 | 14 | — |
Little brown bat (Myotis lucifugus) | — | — | 9 | 3 | — |
Ferret (Mustela putroius furo) | — | — | — | 4 | — |
Hoffmann's two toed sloth (Choloepus hoffmanni) | — | — | — | 7 | — |
Gray short-tailed opossum (Monodelphis domestica) | — | — | — | 4 | — |
Nine-banded armadillo (Dasypus novemcinctus) | — | — | — | 1 | — |
Phillipine tarsier (Tarsius syrichta) | — | — | — | — | 3 |
Cape hyrax (Procavia capensis) | — | — | 1 | — | 13 |
Large DNA viruses | |||||
Marek's disease virus (MDV) | 4 | — | — | — | — |
Fowlpox virus (FWPV) | 15 | 2 | 2 | 2 | 1 |
Only species in which highly significant matches were detected are shown. Table S2 provides a complete list of avian and mammalian species for which whole genome sequence data were screened. For large DNA viruses we screened all “Herpesviridae” and “Poxviridae” sequences in GenBank.
Highly significant matches were identified using an empirically determined BLAST bitscore threshold (see Materials and Methods).