Table 3. Consensus sequences and percentages of base conservation at each position.

Nef8528	G	G	A	G	G	A	G	G	A	G	G	T	G	G	G
Consensus seq	G	G	A	G	G	A	G	G	A	G	G	T	A	G	G
% consensus	76	96	90	35	94	87	65	99	95	50	99	99	51	99	99
Nef8547	C	C	A	G	T	C	A	C	A	C	C	T	C	A	G	G	T	A	C	C	T	T	T	A	A	G	A	C	C
Consensus seq	C	C	A	G	T	C	A	C	A	C	C	T	C	A	G	G	T	A	C	C	T	T	T	A	A	G	A	C	C
% consensus	99	99	97	99	99	91	98	85	80	99	99	75	99	99	86	99	99	77	99	99	86	79	98	90	99	99	91	99	99
Nef8624	G	G	G	G	G	G	A	C	T	G	G	A	A	G	G	G
Consensus seq	G	G	G	G	G	G	A	C	T	G	G	A	A	G	G	G
% consensus	98	99	99	99	99	99	99	99	99	99	99	99	68	99	99	99

Bases involved in G-4 folding are shown in bold.