Table 1. Patient information for the 11 genotype 2 isolates and the number of nucleotides/amino acids in each genomic region.
Bold entries indicate regions that are variable in length.
ID | Age | Sex | Origin | Full | ORF | 5′ UTR | Core | E1 | E2 | p7 | NS2 | NS3 | NS4A | NS4B | NS5A | NS5B | 3′ UTR |
H77* | – | – | – | 9646 | 9036/3011 | 341 | 573/191 | 576/192 | 1089/363 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1344/448 | 1776/591 | 269 |
QC114 | 57 | F | Portuguese | 9508 | 9102/3033 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 66 |
QC178 | 69 | M | Vietnam | 9618 | 9105/3034 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1401/467 | 1776/591 | 173 |
QC182 | 36 | F | Cameroon | 9519 | 9114/3037 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1410/470 | 1776/591 | 65 |
QC232 | 68 | M | Egypt | 9509 | 9102/3033 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 67 |
QC259 | 38 | F | Benin | 9508 | 9102/3033 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 66 |
QC283 | 53 | F | Haiti | 9512 | 9102/3033 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 70 |
QC289 | 41 | F | Africa | 9514 | 9102/3033 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 72 |
QC297 | 68 | F | Italy | 9510 | 9096/3031 | 340 | 573/191 | 576/192 | 1095/365 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 74 |
QC302 | 61 | F | Europe? | 9615 | 9102/3033 | 340 | 573/191 | 576/192 | 1101/367 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1398/466 | 1776/591 | 173 |
QC331 | 75 | M | Canada? | 9628 | 9111/3036 | 341 | 573/191 | 576/192 | 1098/366 | 189/63 | 651/217 | 1893/631 | 162/54 | 783/261 | 1410/470 | 1776/591 | 176 |
QC64 | 65 | M | Indonesia | 9825 | 9318/3105 | 340 | 573/191 | 576/192 | 1101/367 | 390/130 | 651/217 | 1893/631 | 162/54 | 783/261 | 1413/471 | 1776/591 | 167 |
The H77 genome (GenBank accession no. NC_004102), HCV genotype 1, is included for comparison.