Figure 5.

Small RNA mapping results and expression profiles to features. Percentage of reads mapping to the genome or annotated features; results are shown using multi-mapping (unlimited alignments) and unique mapping (single alignment) for the samples indicated on the X axis. The fraction of reads corresponding to novel transcribed features is indicated in red (A). Of the small RNAs that map to known features, the percent of small RNAs mapping to specific features is indicated for both multi and unique mapping (B). RPM values (y-axis) for each small RNA library (x-axis) were quantified against all annotated TE element families in A. aegypti for both multi and unique mapping. Numbers highlight the TEs for which small RNAs are most abundant across all samples (C).