Table 1.

Summary of observed differences in sequence outputs of STS and PGM mtGenome typing.

Location	100 bp chemistry			200 bp chemistry			200 bp chemistry_NextGENe
	# of differences	False positives	False negatives	# of differences	False positives	False negatives	# of differences	False positives	False negatives
HVS-1 (16183–16189)	2		2	1		1	12	6	6
HVS-1 (16190–16194)	5	3	2	3		3	2		2
HVS-2 (302–310)	16		16	14		14	1		1
HVS-2 (311–316)	31		31	33		33	1		1
HVS-3 (567–574)	1		1	2		2	1		1
AC-stretch	0			0			2		2
Indels	11	9	2	13	11	2	40		40
Substitutions	29	26	3	15	1	14	6	2	4
Pointheteroplasmy	0			0			1		1
Total	95			81			66