Table 3.
Summary of point heteroplasmy reported with STS and PGM.
| Sample | STS | PGM – variant caller |
|
|---|---|---|---|
| 100 bp chemistry | 200 bp chemistry | ||
| WGS01 | 6367Y | 6367C | 6367C |
| Var. Freq. = 25, cv = 260 | Var. Freq. = 22, cv = 245 | ||
| WGS03 | 966M | Not found | 966C |
| Var. Freq. = 66, cv = 161 | |||
| WGS05 | 204Y | Not found | nd |
| WGS09 | 8473Y | 8473C | nd |
| Var. Freq. = 41, cv = 79 | |||
| WGS11 | 16245Y | Not found | nd |
| WGS14 | 15623R | 15623A | 15623A |
| Var. Freq. = 19, cv = 643 | Var. Freq. = 26, cv = 689 | ||
| 16391R | 16391A | 16391A | |
| Var. Freq. = 48, cv = 519 | Var. Freq. = 39, cv = 593 | ||
| WGS15 | 9966R | 9966A | 9966A |
| Var. Freq. = 72, cv = 563 | Var. Freq. = 68, cv = 1248 | ||
| WGS18 | 152Y | 152C | 152C |
| Var. Freq. = 72, cv = 438 | Var. Freq. = 75, cv = 622 | ||
| 1578R | 1578R | 1578R | |
| Var. Freq. = 16, cv = 575 | Var. Freq. = 16, cv = 897 | ||
| WGS20 | 16201Y | 16201Y | 16201Y |
| Var. Freq. = 10, cv = 145 | Var. Freq. = 18, cv = 272 | ||
| WGS29 | 195Y | nd | 195C |
| Var. Freq. = 67, cv = 3743 | |||
| WGS36 | 8252Y | 8252T | 8252T |
| Var. Freq. = 31, cv = 216 | Var. Freq. = 44, cv = 371 | ||
| WGS42 | 234R | nd | 234G |
| Var. Freq. = 47, cv = 2762 | |||
nd: not determined.