Table 2. Prediction of transcription factor binding sites of NF-κB and p38-dependent genes using opossum.

TF§	TF Class	Background TFBS rate†	Target TFBS rate		Z-score
RELA (p65)	REL	0.0043		0.0152		17.64
REL	REL	0.0094		0.0241		16.04
NFKB1	REL	0.0028		0.0108		15.98
NF-κB (p50)	REL	0.0061		0.0152		12.27
DDIT3-C/EBPα	bZIP	0.0036		0.0086		8.55
C/EBPα	bZIP	0.0114		0.0193		7.80
HLF#	bZIP	0.0048		0.0096		7.27
SRF#	MADS	0.0005		0.0021		7.19
USF1#	bHLH-ZIP	0.0083		0.0144		6.95
SOX9	High Mobility Group	0.0115		0.0185		6.87

^§TF: transcription factor.

^†Background TFBS rate: rate of transcription factor binding site in genome.

^#TF Abbreviation: HLF: hepatic leukemia factor; SRF: serum response factor; USF1: Upstream stimulatory factor 1.