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. 2013 Aug 16;14(8):16901–16916. doi: 10.3390/ijms140816901

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© 2013 by the authors; licensee MDPI, Basel, Switzerland

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).

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Multiple sequence alignment of selected predicted binding sites (PBSs) that were also positive for the MEME common motif search. Only MEME motifs located near (“_near”) or overlapping (“_OL”) SP type PBSs are indicated. (a) Alignment including the complete version of the afe-box (30 nucleotides); (b) Alignment including the central palindromic module of the afe-box (18 nucleotides). PBS_24_OL and PBS_46 align with better scoring to the right half of the complete afe-box. Numbers correspond to PBSs listed in Supplementary Table 1; (c) Sequence logo file created from the sequence alignment shown in b.